home > bioproject > PRJEB32082
identifier PRJEB32082
type bioproject
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title NGS in hematopoietic cell transplant recipients
description Transplant-associated thrombotic microangiopathy (TA-TMA) is a life-threatening complication of allogeneic hematopoietic cell transplantation (HCT). We hypothesized that pre-transplant genetic susceptibility is evident in adult TA-TMA patients at the level of TMA-associated variants and further investigated the association of genetic variants with clinical outcomes. We studied 30 patients with TA-TMA at a median of 73 (9-540) post-transplant days, donors of 18/30 patients and 30 control non-TMA HCT recipients, without significant differences in transplant characteristics. Genomic DNA from pre-transplant peripheral blood was analyzed by targeted next generation sequencing for complement regulatory genes and ADAMTS13. Donors presented significantly lower frequency of rare variants (p=0.049) and variants in exonic/splicing/UTR regions (p=0.025), compared to TA-TMA patients. Controls also showed a significantly lower frequency of rare variants in ADAMTS13 (p=0.001), CD46 (p=0.002), CFH (p=0.010) and CFI (p=0.031). Pathogenic variants were found in ADAMTS13, CFH, CFI and CFB, while homozygous pathogenic variants in ADAMTS13 and CFB were evident in only 4 TA-TMA patients (p=0.038). Patients refractory to conventional treatment (70%) were significantly (p=0.045) enriched for variants in exonic/splicing/UTR regions compared to responders. Nineteen of 30 patients (63%) succumbed to transplant-related mortality, which was also associated with significantly (p=0.012) increased frequency of variants in exonic/splicing/UTR regions. In conclusion, increased incidence of pathogenic, rare and variants in exonic/splicing/UTR regions of TA-TMA patients suggests genetic susceptibility not evident in controls or donors. Notably, variants in exonic/splicing/UTR regions were associated with poor response and survival. Therefore, pre-transplant genomic screening may be useful to intensify monitoring and early intervention in high-risk patients.
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dbXrefs
sra-run  ERR3267301ERR3267302ERR3267303ERR3267304ERR3267305ERR3267306ERR3267307ERR3267308ERR3267309ERR3267310 More
sra-submission  ERA1824482
biosample  SAMEA5559089SAMEA5559090SAMEA5559091SAMEA5559092SAMEA5559093SAMEA5559094SAMEA5559095SAMEA5559096SAMEA5559097SAMEA5559098 More
sra-study  ERP114713
sra-sample  ERS3361125ERS3361126ERS3361127ERS3361128ERS3361129ERS3361130ERS3361131ERS3361132ERS3361133ERS3361134 More
sra-experiment  ERX3293909ERX3293910ERX3293911ERX3293912ERX3293913ERX3293914ERX3293915ERX3293916ERX3293917ERX3293918 More
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status public
visibility unrestricted-access
dateCreated 2019-04-19T00:00:00Z
dateModified 2019-04-19T00:00:00Z
datePublished