home > bioproject > PRJEB32123
identifier PRJEB32123
type bioproject
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title Trafficking of siRNA precursors by the dsRBD protein Blanks in Drosophila
description RNA interference targets aberrant transcripts with cognate small interfering RNAs, which are derived from double-stranded RNA precursors. Several functional screens have identified Drosophila Blanks as a facilitator of RNAi, yet its molecular function has remained unknown - potentially because of its restricted expression pattern. We demonstrate that Blanks selectively boosts RNAi phenomena triggered by dsRNA of nuclear origin . Blanks binds dsRNA, shuttles between nucleus and cytoplasm and the abundance of certain endogenous siRNAs is reduced in Blanks mutant testes. The fertility defect of blanks mutant males is unrelated to the RNA binding activity of blanks. In contrast, increased nuclear retention of Blanks reduces fertility and distorts the small RNA profile. However, this only occurs if Blanks is competent for RNA binding. Since Blanks protein with increased nuclear retention reduces endogenous siRNA abundance, we propose that Blanks facilitates the export of dsRNA to the cytoplasm for further processing by the RNAi machinery. Accordingly, we identified a set of blanks dependent small RNAs and refer to them as “Blanks exported endogenous siRNAs” or bepsiRNAs. While Blanks considerably augments nuclear-triggered interference in S2-cells, it is not per se essential for RNAi. This is consistent with the restricted expression pattern of blanks (testes and certain cell culture lines) and indicates redundancy and/or alternative backup mechanisms.
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dbXrefs
sra-run  ERR3276582ERR3276583ERR3276584ERR3276585ERR3276586ERR3276587ERR3276588ERR3276589ERR3276590ERR3276591 More
sra-submission  ERA1827078
biosample  SAMEA5563323SAMEA5563324SAMEA5563325SAMEA5563326SAMEA5563327SAMEA5563328SAMEA5563329SAMEA5563330SAMEA5563308SAMEA5563309 More
sra-study  ERP114762
sra-sample  ERS3365353ERS3365354ERS3365355ERS3365356ERS3365357ERS3365358ERS3365359ERS3365360ERS3365338ERS3365339 More
sra-experiment  ERX3303433ERX3303434ERX3303435ERX3303436ERX3303437ERX3303438ERX3303439ERX3303440ERX3303441ERX3303442 More
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status public
visibility unrestricted-access
dateCreated 2019-05-11T00:00:00Z
dateModified 2019-05-11T00:00:00Z
datePublished