home > bioproject > PRJEB32169
identifier PRJEB32169
type bioproject
sameAs
organism
title RNA-seq of Brassica napus root and shoot tissues after infection with Pseudomonas aeruginosa
description Phytohormones control many vital biological processes within plants, including growth and development, senescence, seed setting, fruit ripening and innate immunity. These biological processes are controlled by specific combinations of multiple phytohormones. The three main phytohormones involved in plant innate immunity are salicylic acid (SA), jasmonic acid (JA) and ethylene (ET). SA is produced in response to biotrophic and hemibiotrophic pathogens. Whereas, JA and ET are produced in response to necrotrophic pathogens. Pseudomonas aeruginosa is found ubiquitously within the environment, and has been shown to participate in both beneficial and pathogenic interactions with host plants depending on bacterial strain and environment. In this study, we found that Brassica napus (canola) seedlings infected with P. aeruginosa strain PA14 displayed symptoms of disease and had significant weight loss in both root and shoot. Our transcriptomic data revealed that many molecular processes involved in plant innate immunity were upregulated, whereas photosynthesis was downregulated.
data type Other
organization
publication
properties 
{...}
dbXrefs
sra-run  ERR3280968ERR3280969ERR3280970ERR3280971ERR3280972ERR3280973ERR3280974ERR3280975ERR3280976ERR3280977 More
sra-submission  ERA1829640ERA2374836
biosample  SAMEA5567359SAMEA5567360SAMEA5567361SAMEA5567362SAMEA5567363SAMEA5567364SAMEA5567365SAMEA5567366SAMEA5567367SAMEA5567368 More
sra-study  ERP114816
sra-sample  ERS3369384ERS3369385ERS3369386ERS3369387ERS3369388ERS3369389ERS3369390ERS3369391ERS3369392ERS3369393 More
sra-experiment  ERX3307777ERX3307778ERX3307779ERX3307780ERX3307781ERX3307782ERX3307783ERX3307784ERX3307785ERX3307786 More
distribution JSONJSON-LD
Download
bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2019-04-27T00:00:00Z
dateModified 2019-04-27T00:00:00Z
datePublished