home > bioproject > PRJEB32175
identifier PRJEB32175
type bioproject
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organism
title Comparative genomic and transcriptome analysis of M. kansasii subtypes provides new insights on its taxonomy and pathogenicity
description Mycobacterium kansasii shows a close phylogenetic relationship with Mycobacterium tuberculosis which causes more than 1.5 million deaths per year in recent years. Seven subtypes (I-VII) have been identified using molecular biology approach while Type I-V were the most commonly discovered, and subtype I represents the most frequent isolates contributing to human disease. To investigate the genotypes and pathogenicity components of M. kansasii, we have sequenced the genome of M. kansasii subtypes KAUST I-V with PacBio sequencing technique to describe complete and accurate genomes, then undertook comparative genomics and a transcriptomic approach. We proposed that the “subtypes” of M. kansasii should be considered as different species and developed the genotyping primers for Type I-V. We have also found out several potential virulence factors and determined the pathogenic role of the espACD operon in M. kansasii.
data type Other
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dbXrefs
sra-run  ERR3281097ERR3281098ERR3281099ERR3281100ERR3281101ERR3281181ERR3281182ERR3281183ERR3281184ERR3281185 More
sra-submission  ERA1831085ERA1835554ERA1836024ERA1836209
biosample  SAMEA5567572SAMEA5567573SAMEA5567574SAMEA5567575SAMEA5567576SAMEA5567784SAMEA5567785SAMEA5567786SAMEA5567787SAMEA5567788 More
sra-study  ERP114822
sra-sample  ERS3369597ERS3369598ERS3369599ERS3369600ERS3369601ERS3369808ERS3369809ERS3369810ERS3369811ERS3369812 More
sra-experiment  ERX3307882ERX3307883ERX3307884ERX3307885ERX3307886ERX3307966ERX3307967ERX3307968ERX3307969ERX3307970 More
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status public
visibility unrestricted-access
dateCreated 2019-11-26T00:00:00Z
dateModified 2019-11-26T00:00:00Z
datePublished