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identifier PRJEB32376
type bioproject
sameAs
organism
title Cross_species_somatic_mutation_rate_project___ring_tailed_lemur
description Cancer is the result of the accumulation of mutations in the DNA of somatic tissue during the lifetime of an organism. Therefore, animals that live longer and/or have a larger number of cells should have a higher incidence of cancer. However there appears not to be no clear correlation between the longevity or body-size of a species and its rates of cancer incidence This lack of an expected correlation is known as ‘Peto’s paradox’. One potential explanation of this paradox is that as species increase in size or longevity there is selection for mechanisms to decrease cancer risk. One potential mechanism for this Is reducing the somatic mutation rate. However, we currently know almost nothing about the somatic mutation rate in non-human species. To address this, we plan to compare the somatic mutation rate in a range of species. In particular, mice and naked-mole rats have a similar body size yet differ drastically in their longevity, with laboratory mice having a maximum life-span of a few years while naked-mole rats can live >32 years. By quantifying the somatic mutation rate of these species using whole-genome sequence data from monoclonal colonies derived from blood stem cells and laser-capture microdissected individual colonic crypts we will be able to compare the somatic mutation rate across these species. We will also compare the mutational signatures of these species, to learn more about the variation in the mutational processes that underlie somatic mutation across species. These results are expected to further our understanding of the evolution of the somatic mutation rate across species and may have implications for our understanding of cancer.
data type Other
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properties 
{...}
dbXrefs
sra-run  ERR4163396ERR4163397ERR4163398ERR4163399ERR4163400ERR4163401ERR4163402ERR4163403ERR4163404ERR4163405 More
sra-submission  ERA2623602ERA2667128ERA3346482
biosample  SAMEA5533100SAMEA5533120SAMEA5533121SAMEA5533122SAMEA5533123SAMEA5533102SAMEA5533103SAMEA5533110SAMEA5533126SAMEA5533105
sra-study  ERP115057
sra-sample  ERS3335171ERS3335191ERS3335192ERS3335193ERS3335194ERS3335173ERS3335174ERS3335181ERS3335197ERS3335176
sra-experiment  ERX4128725ERX4128726ERX4128727ERX4128728ERX4128729ERX4128730ERX4128731ERX4128732ERX4128733ERX4128734 More
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status public
visibility unrestricted-access
dateCreated 2020-05-21T00:00:00Z
dateModified 2020-05-21T00:00:00Z
datePublished