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identifier PRJEB32441
type bioproject
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title Host-derived fecal microRNAs can indicate gut microbiota healthiness and ability to induce inflammation
description Disruption of intestine-microbiota symbiosis can result in chronic gut inflammation. We hypothesize that assessing the initial inflammatory potential of the microbiota in patients is essential and that host-derived miRNAs, which can be found in feces, could fulfill this function. We investigated whether the gut microbiota composition impacts the fecal miRNA profile and thereby indicates its ability to influence intestinal inflammation.Methods: We used high-throughput qPCR to compare fecal miRNA profile between germ-free and conventional mice. Conventionalization of germfree mice by various colitogenic and non colitogenic microbiotas (IL10-/- and TLR5-/- associated microbiota) was performed. Results: We identified 12 fecal miRNAs impacted by the presence of a microbiota. Conventionalization of germfree mice by various colitogenic and non-colitogenic microbiotas associated with the development of intestinal inflammation (IL10-/- and TLR5-/- associated microbiota) yielded distinctively altered fecal miRNA profiles compared to that of mice receiving a “healthy” microbiota. Correlation analysis revealed the existence of interactions between the 12 above-mentioned miRNAs and specific microbiota members.Conclusion: These results showed that fecal miRNA profile can be differentially and specifically impacted by microbiota composition, and that miRNA could importantly serve as markers of the colitogenic potential of the microbiota. This is particularly relevant to assess individual state of the microbiota in patients with dysbiosis-related disorders, such as IBD and potentially determine their ability to respond to therapeutics.
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sra-run  ERR3309740ERR3309741ERR3309742ERR3309743ERR3309744ERR3309745ERR3309746ERR3309747ERR3309748ERR3309749 More
sra-submission  ERA1886468
biosample  SAMEA5593872SAMEA5593873SAMEA5593874SAMEA5593875SAMEA5593876SAMEA5593877SAMEA5593878SAMEA5593879SAMEA5593880SAMEA5593881 More
sra-study  ERP115130
sra-sample  ERS3398085ERS3398086ERS3398087ERS3398088ERS3398089ERS3398090ERS3398091ERS3398092ERS3398093ERS3398094 More
sra-experiment  ERX3335623ERX3335624ERX3335625ERX3335626ERX3335627ERX3335628ERX3335629ERX3335630ERX3335631ERX3335632 More
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status public
visibility unrestricted-access
dateCreated 2019-07-07T00:00:00Z
dateModified 2019-07-07T00:00:00Z
datePublished