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identifier PRJEB32497
type bioproject
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organism
title Genomic_and_metabolomic_polymorphism_among_experimentally_selected_paromomycin_resistant_Leishmania_donovani_strains
description Understanding the mechanism(s) underpinning drug resistance could lead to novel treatments to reverse the increased tolerance of a pathogen. In this study paromomycin (PMM) resistance (PMM-R) was induced in three Nepalese clinical strains of L. donovani, with different inherent susceptibility to antimony drugs (Sb), by step-wise exposure of promastigotes to PMM. Exposure to PMM resulted in the production of mixed populations of parasites even though a single cloned population was used at the start of selection. PMM IC50 values for PMM-R parasites varied between 104-481 µM at the promastigotes stage and 32-195 µM at the intracellular amastigotes stage. PMM resistance was associated with increased resistance to nitric oxide at the amastigote but not the promastigote stage (p < 0.05). This effect was most marked in the Sb-R PMM-R clone, where PMM-R resistance was associated with a significant upregulation in glutathione compared to its WT (p < 0.05) although there was no change in trypanothione (detected in its oxidised form). Interestingly, PMM-R strains showed an increase in either the keto acid derivative of isoleucine (Sb-I PMM-R) or the 2-hydroxy acids derived from arginine and tyrosine (Sb-S PMM-R and Sb-R PMM-R). These results are consistent with the recent finding that upregulation of the branch-chain amino acid aminotransferase and the D-lactate dehydrogenase are linked to PMM-R. In addition, we found that PMM-R was associated with a significant increase in aneuploidy during PMM selection in all the strains, which could allow rapid selection of genetic changes that confer a survival advantage. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/
data type Other
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properties 
{...}
dbXrefs
sra-run  ERR206579ERR206580ERR206581ERR206599ERR206604ERR206613ERR206614ERR206615ERR261861ERR261862 More
sra-submission  ERA177411ERA207254ERA269030
biosample  SAMEA1560816SAMEA1560801SAMEA1560783SAMEA1560828SAMEA1560652SAMEA1560724SAMEA1560727SAMEA1560712SAMEA1876215SAMEA1876214 More
sra-study  ERP115194
sra-sample  ERS159870ERS159871ERS159872ERS161527ERS161532ERS160176ERS160177ERS160178ERS197371ERS197372 More
sra-experiment  ERX181264ERX181265ERX181266ERX181284ERX181289ERX181298ERX181299ERX181300ERX236379ERX236380 More
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status public
visibility unrestricted-access
dateCreated 2019-05-11T00:00:00Z
dateModified 2019-05-11T00:00:00Z
datePublished