home > bioproject > PRJEB32659
identifier PRJEB32659
type bioproject
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title The soil mycobiota of Colombian agroenvironments
description The present work describes the soil mycobiota in the upper AndeanColombian agro-environments using a meta-barcoding approach on fungal ITS1 region. Colombia is a country for which one of the highest biodiversity rates is reported, even if mycological data are scarce anddiscontinuous. The region sampled in this study belongs to the upper Andean zone and has a notable ecological and economical value:originally covered by forests, in the last 50 years human activities have turned it intograsslands partly devoted to subsistence agriculture. Recently, economically relevant cultureshave been introduced, such as fine varieties of fruit trees.The present meta-barcoding analysis wants to deepen the knowledge of the microbiological condition ofthis land, to guide future choices aimed at its sustainable management. The analysis revealed ca. 150 described species of fungi differently distributed inorchards and non-cultivated areas. The bootstrap-based clustering analysis evidences a clearresponse of fungal community to different use of soil in the agro-environment.
data type Other
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{...}
dbXrefs
sra-run  ERR3333270ERR3333271ERR3333272ERR3333273ERR3333274ERR3333275
sra-submission  ERA1912159
biosample  SAMEA5618746SAMEA5618747SAMEA5618748SAMEA5618749SAMEA5618750SAMEA5618751
sra-study  ERP115364
sra-sample  ERS3422833ERS3422834ERS3422835ERS3422836ERS3422837ERS3422838
sra-experiment  ERX3357985ERX3357986ERX3357987ERX3357988ERX3357989ERX3357990
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status public
visibility unrestricted-access
dateCreated 2019-07-20T00:00:00Z
dateModified 2019-07-20T00:00:00Z
datePublished