home > bioproject > PRJEB33056
identifier PRJEB33056
type bioproject
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organism
title Estrogen receptor β role in tumour suppression of triple negative breast cancer - ChIPseq experiment
description Breast cancer (BC) is the most common cancer in women worldwide, and is classified in multiple subtypes, including the so called triple-negative BC (TNBC). This is characterized by lack of estrogen receptor alpha (ERα), progesterone receptor (PR) and epidermal growth factor receptor 2 (HER2/neu), that represent common targets for BC treatment. Their absence limits the number of therapies that may be applied for TNBC treatment, suggesting the need to identify novel therapeutic targets against this disease. Several studies reported that the beta ER subtype (ERβ) is expressed in a sizeable fraction of TNBCs where its presence correlates with improved patient outcome. We evaluated ERβ expression in TNBC tissues by immunohistochemistry using two validated antibodies, demonstrating presence of this protein in 28% of samples. To investigate, in this context, the role of this estrogen receptor in TNBC biology, ERβ-expressing cell lines, representing different TNBC subtypes, were generated. Cellular and functional assays confirmed the antiproliferative activity of ERβ in TNBCs. Interaction proteomics revealed in BC nuclei the presence of several protein complexes associated with this receptor involved in chromatin remodeling, miRNA maturation and mRNA transcription. Transcriptome analyses pointed out tumor subtype-specific signaling pathways deregulation. Interestingly, among these the cholesterol biosynthesis pathway was commonly downregulated in all cell lines tested. Global analyses of ERβ binding to the genome showed its recruitment to regulatory sites of Sterol Regulatory Element-Binding Protein 1 (SREBP1), indicating a direct regulation of this pathway by the receptor. These findings suggest that drugs targeting components of cholesterol biosynthesis pathway may be new potential therapeutic options for TNBC treatment.
data type Other
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{...}
dbXrefs
sra-run  ERR3376637ERR3376638ERR3376639ERR3376640
sra-submission  ERA2008332
biosample  SAMEA5716639SAMEA5716640SAMEA5716641SAMEA5716642
sra-study  ERP115816
sra-sample  ERS3520266ERS3520267ERS3520268ERS3520269
sra-experiment  ERX3400789ERX3400790ERX3400791ERX3400792
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status public
visibility unrestricted-access
dateCreated 2019-12-04T00:00:00Z
dateModified 2019-12-04T00:00:00Z
datePublished