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identifier PRJEB40432
type bioproject
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organism
title Transfer of environmental microbes to the skin and respiratory tract of humans after urban green space exposure
description In industrialized countries, non-communicable diseases have been increasing in prevalence since the middle of the 20th century. While the causal mechanisms remain poorly understood, increased population density, pollution, sedentary behavior, smoking, changes in diet, and limited outdoor exposure have all been proposed as significant contributors. Several hypotheses (e.g. Hygiene, Old Friends, and Biodiversity Hypotheses) also suggest that limited environmental microbial exposures may underpin part of this rise in non-communicable diseases. In response, the Microbiome Rewilding Hypothesis proposes that adequate environmental microbial exposures could be achieved by restoring urban green spaces and could potentially decrease the prevalence of non-communicable diseases. However, the microbial interactions between humans and their surrounding environment and the passaging of microbes between both entities remains poorly understood, especially within an urban context. Here, we survey human skin (n = 90 swabs) and nasal (n = 90 swabs) microbiota of three subjects that were exposed to air (n = 15), soil (n = 15), and leaves (n = 15) from different urban green space environments in three different cities across different continents (Adelaide, Australia; Bournemouth, United Kingdom; New Delhi, India). Using 16S ribosomal RNA metabarcoding, we examined baseline controls (pre-exposure) of both skin (n = 16) and nasal (n = 16) swabs and tracked microbiota transfer from the environment to the human body after exposure events. Microbial richness and phylogenetic diversity increased after urban green space exposure in skin and nasal samples collected in two of the three locations. The microbial composition of skin samples also became more similar to soil microbiota after exposure, while nasal samples became more similar to air samples. Nasal samples were more variable between sites and individuals than skin samples. We show that exposure to urban green spaces can increases skin and nasal microbial diversity and alters human microbiota composition. Our study improves our understanding of human-environmental microbial interactions and suggests that increased exposure to diverse outdoor environments
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Transfer of environmental microbes to the skin and respiratory tract of humans after urban green space exposure.
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dbXrefs
sra-run  ERR4607022ERR4607023ERR4607024ERR4607025ERR4607026ERR4607027ERR4607028ERR4607029ERR4607030ERR4607031 More
sra-submission  ERA2915245
biosample  SAMEA7325358SAMEA7325359SAMEA7325360SAMEA7325361SAMEA7325362SAMEA7325363SAMEA7325364SAMEA7325365SAMEA7325366SAMEA7325367 More
sra-study  ERP124074
sra-sample  ERS5083888ERS5083889ERS5083890ERS5083891ERS5083892ERS5083893ERS5083894ERS5083895ERS5083896ERS5083897 More
sra-experiment  ERX4539126ERX4539127ERX4539128ERX4539129ERX4539130ERX4539131ERX4539132ERX4539133ERX4539134ERX4539135 More
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status public
visibility unrestricted-access
dateCreated 2020-09-24T00:00:00Z
dateModified 2020-09-24T00:00:00Z
datePublished