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identifier PRJEB6636
type bioproject
sameAs
organism
title Retinoic acid and Azakenpoullone treatment in SH-SY5Y/6TR(EU)/pTrex-Dest-30/MYCN cell line in high and low MYCN levels
description The effect of the GSK3 inhibitor Azakenpaullone (Azak) and the differentiation agent retinoic acid (RA) was studied in low and high MYCN levels in the MYCN inducible neuroblastoma cell line SH-SY5Y/6TR(EU)/pTrex-Dest-30/MYCN (SY5Y-MYCN). Azak was dissolved in DMSO in order to apply it to the cells. Therefore a vehicle control consisting of SY5Y-MYCN cells treated with 24h 1µl/ml DMSO only was used in duplicates. Doxycycline (Sigma) dissolved in water was used at a final concentration of 1μg/ml to induce MYCN expression in SY5Y-MYCN. A co-treatment study with Dox and Azak was conducted. SY5Y-MYCN cells were treated with 24h Azak, 24h Azak & 48h Dox and 48h Dox, with biological duplicates.1 μM RA (dissolved in DMSO) and 1 μg/mL Doxycycline were given individually and in combination. SY5Y-MYCN cells were treated with 24h RA, 24h RA & 48h Dox, and 48h Dox and RNA was extracted in biological duplicates. For the 24h RA & 48h Dox co-treatment cells were treated with Dox for 24h and then with RA and fresh Dox for a further 24h.
data type Other
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dbXrefs
sra-run  ERR550439ERR550440ERR550441ERR550442ERR550443ERR550444ERR550445ERR550446ERR550447ERR550448 More
sra-submission  ERA323251
biosample  SAMEA2730783SAMEA2730785SAMEA2730816SAMEA2730852SAMEA2730818SAMEA2730815SAMEA2730784SAMEA2730851SAMEA2730782SAMEA2730853 More
sra-study  ERP006185
sra-sample  ERS487265ERS487267ERS487269ERS487274ERS487271ERS487268ERS487266ERS487273ERS487264ERS487275 More
sra-experiment  ERX509509ERX509511ERX509513ERX509518ERX509515ERX509512ERX509510ERX509517ERX509508ERX509519 More
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status public
visibility unrestricted-access
dateCreated 2015-07-01T00:00:00Z
dateModified 2015-07-01T00:00:00Z
datePublished 2015-06-30T00:00:00Z