home > bioproject > PRJEB7113
identifier PRJEB7113
type bioproject
sameAs
organism
title Campylobacter jejuni ST-403 cloncal complex characterisation
description Campylobacter jejuni is a highly diverse species of bacteria commonly associated with infectious gastro-intestinal disease of humans and zoonotic carriage in poultry, cattle, pigs, and other animals. The species contains a large number of distinct clonal complexes which vary from host generalist lineages commonly found in poultry livestock and human disease cases, to host-adapted specialised lineages primarily associated with livestock or poultry. Here we present novel data on the ST-403 clonal complex of C. jejuni, a lineage showing association with porcine hosts. Our data shows this is a phylogenetically distinct lineage exhibiting a distinctive pattern of intra-lineage recombination which is accompanied by the presence of lineage specific restriction-modification systems. Furthermore we show that the ST-403 complex has undergone gene decay at a number of loci. Our data shows that host association of C. jejuni lineages can be connected with both gene gain and gene loss through pseudogenisation, potentially associated with niche adaptation of this most important human pathogen.
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dbXrefs
sra-run  ERR588698ERR588699ERR588700ERR588701ERR588702ERR588703ERR588704ERR588705ERR588706ERR588707
sra-submission  ERA352800
biosample  SAMEA2734271SAMEA2734272SAMEA2734273SAMEA2734274SAMEA2734275SAMEA2734276SAMEA2734277SAMEA2734278SAMEA2734279SAMEA2734280
sra-study  ERP006801
sra-sample  ERS534811ERS534812ERS534813ERS534814ERS534815ERS534816ERS534817ERS534818ERS534819ERS534820
sra-experiment  ERX546702ERX546703ERX546704ERX546705ERX546706ERX546707ERX546708ERX546709ERX546710ERX546711
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status public
visibility unrestricted-access
dateCreated 2014-10-31T00:00:00Z
dateModified 2014-10-31T00:00:00Z
datePublished 2014-10-29T00:00:00Z