home > bioproject > PRJEB7338
identifier PRJEB7338
type bioproject
sameAs
organism
title Gene loss from a plant sex chromosome system
description Sex chromosomes have evolved independently in numerous animal and plant lineages. After recombination becomes suppressed between two homologous sex chromosomes, genes on the non-recombining Y chromosomes (and W chromosomes in ZW systems) undergo genetic degeneration, losing functions retained by their X- or Z-linked homologues, changing their expression, and becoming lost. Adaptive changes may also occur, both on the non-recombining Y chromosome, to shut down expression of maladapted genes, and on the X chromosome (or the Z in ZW systems), which may evolve dosage compensation to increase low expression or compensate for poor protein function in the heterogametic sex. Although empirical approaches to studying genetic degeneration have been developed for model species, the onset and dynamics of these changes are still poorly understood, particularly in de novo evolving sex chromosomes. Sex chromosomes of some plants evolved much more recently than those of mammals, birds and Drosophila, making them suitable for studying the early stages of genetic degeneration in de novo evolving sex chromosomes. In plants, haploid selection should oppose gene loss from Y chromosomes, but recent work on sex chromosomes of two plant species has estimated that Y-linked transcripts are lacking for 10% - 30% of X-linked genes. Here, we provide evidence that, in Silene latifolia, this largely involved losses of Y-linked genes, and not suppressed expression of Y-linked alleles, or gene additions to the X chromosome. Our results also suggest that chromosome-wide dosage compensation does not occur in this plant.
data type Other
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{...}
dbXrefs
sra-run  ERR855790ERR855791ERR855792ERR855847ERR855848ERR855849
sra-submission  ERA429867ERA429868ERA429980
biosample  SAMEA3340654SAMEA3340660SAMEA3340661SAMEA3344805SAMEA3344806SAMEA3344807
sra-study  ERP007051
sra-sample  ERS702167ERS702173ERS702174ERS706225ERS706226ERS706227
sra-experiment  ERX935428ERX935429ERX935430ERX935533ERX935534ERX935535
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status public
visibility unrestricted-access
dateCreated 2014-11-20T00:00:00Z
dateModified 2014-11-20T00:00:00Z
datePublished 2014-11-20T00:00:00Z