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identifier PRJEB7917
type bioproject
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title Macrotene chromosomes provides insights to a new mechanism of high-order gene amplification in eukaryotes
description Copy number variation (CNV) of chromosomal segments is now recognized as a major source of genetic polymorphism within natural populations of eukaryotes, as well as a possible cause of genetic diseases in humans, including cancer, but its molecular bases remain incompletely understood. In the baker’s yeast Saccharomyces cerevisiae, a variety of low-order amplifications (segmental duplications) were observed after adaptation to limiting environmental conditions or recovery from gene dosage imbalance, and interpreted in terms of replication-based mechanisms associated or not with homologous recombination. Here, we show the emergence of novel high-order amplification structures, with corresponding overexpression of embedded genes, during evolution under favourable growth conditions of severely unfit yeast cells bearing genetically disabled genomes. Such events form massively extended chromosomes, that we propose to call macrotene, whose characteristics suggest the products of intra-chromosomal rolling-circle type of replication structures, probably initiated by increased accidental template switches under important cellular stress conditions.
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Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes.
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dbXrefs
sra-run  ERR692114ERR692115ERR692116ERR692117ERR692118ERR692119ERR692120ERR692121ERR692122ERR692123 More
sra-submission  ERA392218
biosample  SAMEA3166690SAMEA3166691SAMEA3166692SAMEA3166693SAMEA3166694SAMEA3166695SAMEA3166696SAMEA3166697SAMEA3166698SAMEA3166699 More
sra-study  ERP008906
sra-sample  ERS622562ERS622563ERS622564ERS622565ERS622566ERS622567ERS622568ERS622569ERS622570ERS622571 More
sra-experiment  ERX637094ERX637095ERX637096ERX637097ERX637098ERX637099ERX637100ERX637101ERX637102ERX637103 More
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status public
visibility unrestricted-access
dateCreated 2014-12-03T00:00:00Z
dateModified 2014-12-03T00:00:00Z
datePublished 2014-12-03T00:00:00Z