home > bioproject > PRJEB9837
identifier PRJEB9837
type bioproject
sameAs
organism
title A_global_look_at_Haemonchus_contortus_population_genomics
description Haemonchus contortus is the most economically important gastro-intestinal (GI) helminth of small ruminants, and a model for studying both the mechanism of action of anthelminthic drugs and for understanding the genetics and evolution of resistance to anthelminthics. GI nematodes have evolved resistance to all of the major classes of anthelminthic compounds. Importantly, H. contortus is closely related to hookworms, a group of major human neglected tropical pathogens that are treated with the same compounds as the livestock parasites, so lessons about the genetics and evolution of resistance in this species will be applicable to the surveillance of mass-drug administration campaigns aiming to control the human parasites.This aim of this study is to sequence selected Haemonchus contortus isolates from around the globe. In vitro anthelminthic resistance phenotypes are available for most accessions. This will produce a picture of the diversity of this parasite, and will address fundamental questions about the population biology and epidemiology of this species, such as testing the level of gene flow between geographical regions on both large- and small-scales, and how diversity and different genotypes are associated with anthelminthic resistance status.
data type Other
organization
publication
properties 
{...}
dbXrefs
sra-run  ERR1243502ERR1243503ERR1243504ERR1243505ERR1243506ERR1243507ERR1243508ERR1243509ERR1243510ERR1243511 More
sra-submission  ERA560700ERA565855ERA582797ERA1557936ERA1631891ERA1674239
biosample  SAMEA3753411SAMEA3752597SAMEA3751567SAMEA3753412SAMEA3752598SAMEA3751570SAMEA3753413SAMEA3752599SAMEA3751097SAMEA3751098 More
sra-study  ERP010984
sra-sample  ERS788490ERS788492ERS788494ERS788496ERS788498ERS788500ERS788502ERS788504ERS788352ERS788353 More
sra-experiment  ERX1315440ERX1315441ERX1315442ERX1315443ERX1315444ERX1315445ERX1315446ERX1315447ERX1315448ERX1315449 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2016-02-03T00:00:00Z
dateModified 2016-02-03T00:00:00Z
datePublished 2016-02-02T00:00:00Z