home > bioproject > PRJEB9865
identifier PRJEB9865
type bioproject
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title Temporal adaptation of carotid endothelial transcriptome in hyperlipidemic pigs
description Atherosclerosis is a progressive disease characterized by the accumulation of lipids in the large and medium sized arteries. Lipoproteins and the endothelium play critical roles in the onset of atherosclerosis through the regulation of trans-endothelial lipoprotein flux in the subintima, the expression of adhesion molecules and proinflamatory cytokine, and the recruitment of monocytic precursors to intimal macrophage foam cells. Although it has been greatly studied in animal models, including rabbits, pigs, non-human primates and rodents, the early development of atherosclerosis is unknown. In this study, we characterized the temporal changes of carotid endothelial transcriptome in hyperlipidemic pigs using next-generation RNA sequencing. Twenty litters of castrated barrows swine (Yorkshire x Landrace) were raised on a normal diet. The swine (~250 lbs) were then fed with a diet high in fat and cholesterol (HFHC) for 0, 2, 4, 8, or 12 weeks (n=4 animals for each time point) prior to tissue collections. The normal diet consisted of a standard commercial corn/soybean meal diet (18% crude protein) at 100% ad libitum intake. The isocaloric high fat/high cholesterol diet consisted of 16.5% crude protein, 15% fat and 1.5% cholesterol at 80% of the ad libitum feed rate (by weight) such that the caloric intake/kg BW were approximately the same as the control diet. Diets were adjusted biweekly according to body weight. Food was withheld for 24 hours prior to endothelium collection in order to permits the collection of blood for fasting lipid levels.
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dbXrefs
sra-run  ERR961026ERR961027ERR961028ERR961029ERR961030ERR961031ERR961032ERR961033ERR961034ERR961035 More
sra-submission  ERA458034
biosample  SAMEA3483844SAMEA3483845SAMEA3483846SAMEA3483847SAMEA3483848SAMEA3483849SAMEA3483850SAMEA3483851SAMEA3483852SAMEA3483853 More
sra-study  ERP011014
sra-sample  ERS791136ERS791137ERS791138ERS791139ERS791140ERS791141ERS791142ERS791143ERS791144ERS791145 More
sra-experiment  ERX1038073ERX1038074ERX1038075ERX1038076ERX1038077ERX1038078ERX1038079ERX1038080ERX1038081ERX1038082 More
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status public
visibility unrestricted-access
dateCreated 2020-01-08T00:00:00Z
dateModified 2020-01-08T00:00:00Z
datePublished