home > bioproject > PRJEB9954
identifier PRJEB9954
type bioproject
sameAs
organism
title Whole genome sequencing analysis of Mycobacterium suricattae
description Tuberculosis occurs in various mammalian hosts and is caused by a range of different lineages of the Mycobacterium tuberculosis complex. A recently described member, Mycobacterium suricattae, has been reported to cause tuberculosis in meerkats (Suricata suricatta) in Southern Africa. Preliminary genetic analysis showed this pathogen to be closely related to the M. tuberculosis complex dassie bacillus. Here, we make use of whole genome sequencing to describe the evolution of the genome of M. suricattae, including known and novel regions of difference, SNPs and IS6110 insertion sites. We used genome wide phylogenetic analysis to show that M. suricattae clusters with the chimpanzee bacillus, previously isolated in West Africa. We propose an evolutionary scenario for the M. africanum lineage 6 complex, showing the evolutionary relationship of M. africanum and chimpanzee bacillus, and the closely related members M. suricattae, dassie bacillus and M. mungi.
data type Other
organization
publication
properties 
{...}
dbXrefs
sra-run  ERR970409ERR970410ERR970411ERR970412
sra-submission  ERA460884
biosample  SAMEA3491431
sra-study  ERP011110
sra-sample  ERS798580
sra-experiment  ERX1047373ERX1047374ERX1047375ERX1047376
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status public
visibility unrestricted-access
dateCreated 2015-08-04T00:00:00Z
dateModified 2015-08-04T00:00:00Z
datePublished 2015-08-03T00:00:00Z