home > bioproject > PRJEB9960
identifier PRJEB9960
type bioproject
sameAs
organism
title Draft genome of Pseudoclavibacter helvolus W3
description Here we present a draft genome of Pseudoclavibacter helvolus W3. The strain was isolated from a wall in small Danish Slaughterhouse. We have in a recent publication shown how this strain can be involved in synergistic biofilm formation with other bacterial species isolated from the same environment. Genome sequencing libraries were prepared using the Nextera XT kit (Illumina, USA), according to the manufacturer’s recommendations, followed by sequencing as a part of the flowcell, as 2 × 250-base paired-end reads using the Illumina MiSeq (Illumina, USA) technology. The reads were cleaned and trimmed using CLC Genomics Workbench 7 (CLC bio, Denmark). Cleaned reads were assembled using SPAdes v 3.5.0. Obtained contigs were analyzed by VecScreen, to ensure no primer, phage or transposase contamination occurred in the contigs. Contigs smaller than 500bp were discarded from the contigs list.
data type Genome sequencing and assembly
organization
publication
properties 
{...}
dbXrefs
sra-run  ERR969526
sra-submission  ERA460713
biosample  SAMEA3490270
sra-study  ERP011121
sra-sample  ERS797419ERS797419
sra-experiment  ERX1046484
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status public
visibility unrestricted-access
dateCreated 2016-02-02T00:00:00Z
dateModified 2016-02-02T00:00:00Z
datePublished 2016-02-01T00:00:00Z