home > bioproject > PRJNA178050
identifier PRJNA178050
type bioproject
sameAs
organism Pseudomonas umsongensis 20MFCvi1.1
title Pseudomonas umsongensis 20MFCvi1.1
description Rhizosphere Grand Challenge Isolate Sequencing. The goal of this project is to comprehensively characterize the genomes of microorganisms found in the rhizosphere and endosphere of Arabidopsis thaliana. Organisms for study have been targeted based on their reproducible association with one or more Arabidopsis genotypes grown in natural soil. To obtain more complete genomes from the culturable fraction of the Arabidopsis microbiome, rhizosphere and endosphere samples were used to seed cultures on a variety of media. Cultures were screened by 16S rRNA sequencing and microbes of interest grown up and subjected to whole genome sequencing. Genomic sequences will be analyzed for genes participating in the plant-microbe symbiosis.
data type Genome sequencing and assembly
organization
publication
external link
/lookup?keyName=pmoProjectId&keyValue=1001105&
properties 
{...}
dbXrefs
sra-run  SRR892330
sra-submission  SRA089744
biosample  SAMN02440461SAMN02194762
sra-study  SRP024873
sra-sample  SRS438870
sra-experiment  SRX298947
distribution JSONJSON-LD
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bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2012-10-19T00:00:00Z
dateModified 2012-10-19T00:00:00Z
datePublished 2013-04-22T00:00:00Z