home > bioproject > PRJNA18155
identifier PRJNA18155
type bioproject
sameAs
organism Dorea formicigenerans ATCC 27755
title Reference genome for the Human Microbiome Project
description

Dorea formicigenerans ATCC 27755.The genome sequence consists of 7.5X coverage in plasmid end reads and 454 reads. Further processing has included one round of automated sequence improvement (pre-finishing), along with manual improvement that includes breaking apart any mis-assembly, and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible.

This sequenced strain is part of a comprehensive, sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine, the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome.

data type Genome sequencing and assembly
organization
Washington University Genome Sequencing Center
publication
Reclassification of Eubacterium formicigenerans Holdeman and Moore 1974 as Dorea formicigenerans gen. nov., comb. nov., and description of Dorea longicatena sp. nov., isolated from human faeces.
external link
GOLD
properties 
{...}
dbXrefs
sra-run  SRR000082SRR000083SRR000084SRR000085SRR000086SRR000087SRR000088SRR000089SRR287817
sra-submission  SRA000148
biosample  SAMN00000008
sra-study  SRP000008
sra-sample  SRS000008SRS000008
sra-experiment  SRX000014SRX078383
distribution JSONJSON-LD
Download
bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2006-11-07T00:00:00Z
dateModified 2006-11-07T00:00:00Z
datePublished 2007-10-03T00:00:00Z