home > bioproject > PRJNA183548
identifier PRJNA183548
type bioproject
sameAs
organism Ralstonia sp. JGI 0001001-A05
title Ralstonia sp. JGI 0001001-A05
description Rhizosphere Grand Challenge Single Cell Sequencing. The goal of this project is to comprehensively characterize the genomes of microorganisms found in the rhizosphere and endosphere of Arabidopsis thaliana. Organisms for study have been targeted based on their reproducible association with one or more Arabidopsis genotypes grown in natural soil. To obtain genomes from both culturable and unculturable fractions of the Arabidopsis microbiome, rhizosphere and endosphere samples were disaggregated and individual cells sorted by flow cytometry and amplified by MDA, then microbes of interest were identified by 16S rRNA sequencing and their whole genomes sequenced. Genomic sequences will be analyzed for genes participating in the plant-microbe symbiosis.
data type Genome sequencing and assembly
organization
publication
external link
/lookup?keyName=pmoProjectId&keyValue=1011519&
properties 
{...}
dbXrefs
sra-run  SRR892522
sra-submission  SRA089922
biosample  SAMN02441424SAMN02194920
sra-study  SRP025033
sra-sample  SRS439029
sra-experiment  SRX299221
distribution JSONJSON-LD
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bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2012-12-10T00:00:00Z
dateModified 2012-12-10T00:00:00Z
datePublished 2013-10-25T00:00:00Z