home > bioproject > PRJNA185299
identifier PRJNA185299
type bioproject
sameAs
organism Variovorax paradoxus 110B
title Variovorax paradoxus 110B
description Rhizosphere Grand Challenge Isolate Sequencing. The goal of this project is to comprehensively characterize the genomes of microorganisms found in the rhizosphere and endosphere of Arabidopsis thaliana. Organisms for study have been targeted based on their reproducible association with one or more Arabidopsis genotypes grown in natural soil. To obtain more complete genomes from the culturable fraction of the Arabidopsis microbiome, rhizosphere and endosphere samples were used to seed cultures on a variety of media. Cultures were screened by 16S rRNA sequencing and microbes of interest grown up and subjected to whole genome sequencing. Genomic sequences will be analyzed for genes participating in the plant-microbe symbiosis.
data type Genome sequencing and assembly
organization
publication
external link
/lookup?keyName=pmoProjectId&keyValue=1000532&
properties 
{...}
dbXrefs
sra-run  SRR892326
sra-submission  SRA089742
biosample  SAMN02440495SAMN02194638
sra-study  SRP024871
sra-sample  SRS438867
sra-experiment  SRX298944
distribution JSONJSON-LD
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bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2013-01-04T00:00:00Z
dateModified 2013-01-04T00:00:00Z
datePublished 2013-04-23T00:00:00Z