home > bioproject > PRJNA187217
identifier PRJNA187217
type bioproject
sameAs
organism Lysobacter sp. JGI 0001004-P07
title Lysobacter sp. JGI 0001004-P07
description Rhizosphere Grand Challenge Single Cell Sequencing. The goal of this project is to comprehensively characterize the genomes of microorganisms found in the rhizosphere and endosphere of Arabidopsis thaliana. Organisms for study have been targeted based on their reproducible association with one or more Arabidopsis genotypes grown in natural soil. To obtain genomes from both culturable and unculturable fractions of the Arabidopsis microbiome, rhizosphere and endosphere samples were disaggregated and individual cells sorted by flow cytometry and amplified by MDA, then microbes of interest were identified by 16S rRNA sequencing and their whole genomes sequenced. Genomic sequences will be analyzed for genes participating in the plant-microbe symbiosis.
data type Genome sequencing
organization
publication
external link
/lookup?keyName=pmoProjectId&keyValue=1014762&
properties 
{...}
dbXrefs
sra-run  SRR892394
sra-submission  SRA089799
biosample  SAMN02745765SAMN02194813
sra-study  SRP024924
sra-sample  SRS438922
sra-experiment  SRX299085
distribution JSONJSON-LD
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bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2013-01-24T00:00:00Z
dateModified 2013-01-24T00:00:00Z
datePublished