home > bioproject > PRJNA187224
identifier PRJNA187224
type bioproject
sameAs
organism Burkholderia sp. JGI 0001009-M21
title Burkholderia sp. JGI 0001009-M21
description Rhizosphere Grand Challenge Single Cell Sequencing. The goal of this project is to comprehensively characterize the genomes of microorganisms found in the rhizosphere and endosphere of Arabidopsis thaliana. Organisms for study have been targeted based on their reproducible association with one or more Arabidopsis genotypes grown in natural soil. To obtain genomes from both culturable and unculturable fractions of the Arabidopsis microbiome, rhizosphere and endosphere samples were disaggregated and individual cells sorted by flow cytometry and amplified by MDA, then microbes of interest were identified by 16S rRNA sequencing and their whole genomes sequenced. Genomic sequences will be analyzed for genes participating in the plant-microbe symbiosis.
data type Genome sequencing and assembly
organization
publication
external link
/lookup?keyName=pmoProjectId&keyValue=1014747&
properties 
{...}
dbXrefs
sra-run  SRR892390
sra-submission  SRA089795
biosample  SAMN02440727SAMN02194810
sra-study  SRP024921
sra-sample  SRS438919
sra-experiment  SRX299082
distribution JSONJSON-LD
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bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2013-01-24T00:00:00Z
dateModified 2013-01-24T00:00:00Z
datePublished 2013-10-25T00:00:00Z