home > bioproject > PRJNA195763
identifier PRJNA195763
type bioproject
sameAs
organism Ensifer sp. JGI 0001036-M18
title Ensifer sp. JGI 0001036-M18 Genome sequencing
description Rhizosphere Grand Challenge Single Cell Sequencing. The goal of this project is to comprehensively characterize the genomes of microorganisms found in the rhizosphere and endosphere of Arabidopsis thaliana. Organisms for study have been targeted based on their reproducible association with one or more Arabidopsis genotypes grown in natural soil. To obtain genomes from both culturable and unculturable fractions of the Arabidopsis microbiome, rhizosphere and endosphere samples were disaggregated and individual cells sorted by flow cytometry and amplified by MDA, then microbes of interest were identified by 16S rRNA sequencing and their whole genomes sequenced. Genomic sequences will be analyzed for genes participating in the plant-microbe symbiosis.
data type Genome sequencing
organization
publication
external link
JGI Portal For Ensifer sp. JGI 0001036-M18
GOLD Card For Ensifer sp. JGI 0001036-M18
properties 
{...}
dbXrefs
sra-run  SRR896526
sra-submission  SRA090815
biosample  SAMN02745022SAMN02199380
sra-study  SRP025876
sra-sample  SRS441307
sra-experiment  SRX301961
distribution JSONJSON-LD
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bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2013-04-02T00:00:00Z
dateModified 2013-04-02T00:00:00Z
datePublished