home > bioproject > PRJNA216963
identifier PRJNA216963
type bioproject
sameAs
organism Pseudogymnoascus
title Genome sequencing of 14 Pseudogymnoascus strains
description Geomyces pannorum is a haploid, asexual fungus which can tolerate low temperature and high salinity conditions. We extracted 14 individuals from permafrost and from temperate environments and obtained de novo draft assembly for each of them. Comparative genome analysis reveals extremely high nucleotide diversity (~0.5 synonymous substitutions between individuals) and also reveals certain regions with phylogenetic pattern different from the rest of the genome.
data type Genome sequencing and assembly
organization
publication
Comparative genome analysis of Pseudogymnoascus spp. reveals primarily clonal evolution with small genome fragments exchanged between lineages.
external link
Laboratory of Evolutionary Genomics
properties 
{...}
dbXrefs
sra-run  SRR1027862SRR1029591SRR1029592SRR1029627SRR1029671SRR1029956SRR1030028SRR1030029SRR1030032SRR1030034 More
sra-submission  SRA110698SRA111154SRA111151SRA111156SRA111164SRA111215SRA111279SRA111281SRA111282SRA111285 More
biosample  SAMN02324760SAMN02324761SAMN02400937SAMN02400938SAMN02400942SAMN02400943SAMN02400944SAMN02400945SAMN02400946SAMN02400947 More
sra-study  SRP032821
sra-sample  SRS500631SRS502328SRS502327SRS502337SRS502374SRS502518SRS502557SRS502559SRS502560SRS502564 More
sra-experiment  SRX375379SRX377446SRX377445SRX377455SRX377504SRX377711SRX377753SRX377755SRX377756SRX377760 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2013-08-25T00:00:00Z
dateModified 2013-08-25T00:00:00Z
datePublished 2014-09-09T00:00:00Z