home > bioproject > PRJNA217341
identifier PRJNA217341
type bioproject
sameAs
organism sediment metagenome
title Dehalococcoides-containing environmental samples and enrichment cultures Metagenome
description The organohalide respiring bacteria, Dehalococcoides mccartyi, are pertinent to bioremediation of perchloroethene (PCE) and trichloroethene (TCE), due to their unique metabolic capability to transform chlorinated ethenes to the non-toxic, ethene. Despite their widespread environmental distribution, biostimulation of Dehalococcoides in soil/sediment microcosm studies and during in situ bioremediation has failed to consistently promote reductive dechlorination of PCE/TCE beyond cis-dichloroethene (cis-DCE), commonly attributing this observation to the lack of strains with cis-DCE and vinyl chloride-reducing abilities. Consistent with this observation, in our study, microcosms established with garden soil and mangrove sediment stalled at cis-DCE, even after an extended incubation (200 days) and multiple biostimulation events. Only microcosms containing PCE-contaminated groundwater sediment produced ethene as the end-reduced product. Transfers from cis-DCE stalled microcosms to fresh medium in the absence of soil or sediment, however, yielded complete dechlorination of TCE to ethene, thus, unveiling the “true” biological potential of the endogenous Dehalococcoides. We hypothesized that biostimulation of Dehalococcoides in our cis-DCE-stalled microcosms was impeded by soil or sediment components serving as terminal electron acceptors for growth of microbes competing with Dehalococcoides for electron donor (H2). Therefore, dilution of the soil/sediment and competing microorganisms fostered the growth of Dehalococcoides and the production of ethene in the microcosm transfers. Our findings support this hypothesis through several lines of evidence. We found that i) Proteobacteria classes which dominated soil/sediment microbial communities became undetectable in the enrichment cultures, ii) the enrichment cultures developed contained up to 109 Dehalococcoides mccartyi cells mL−1 and achieved close to dechlorination of 0.5 mmol L−1 TCE to >80% ethene in 1.7 days, iii) methanogenesis drastically decreased in the enrichment cultures, and iv) garden soil and mangrove sediment microcosms bioaugmented with their respective enrichment cultures produced ethene. Our results provide an alternate explanation to “unsuccessful” microcosm experiments, providing a new perspective from which to better understand contaminated site assessments and to improve the bioremediation process.
data type metagenome
organization
publication
properties 
{...}
dbXrefs
sra-run  SRR1024083SRR1024084SRR1024085SRR1024086SRR1024087SRR1024088
sra-submission  SRA110017
biosample  SAMN02361223SAMN02361224SAMN02361225SAMN02361226SAMN02361227SAMN02361228
sra-study  SRP032534
sra-sample  SRS498588SRS498589SRS498590SRS498591SRS498592SRS498593
sra-experiment  SRX373170SRX373171SRX373172SRX373173SRX373174SRX373175
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status public
visibility unrestricted-access
dateCreated 2013-08-27T00:00:00Z
dateModified 2013-08-27T00:00:00Z
datePublished