home > bioproject > PRJNA256104
identifier PRJNA256104
type bioproject
sameAs
organism Diospyros lotus
title Diospyros lotus strain:Kunsenshi Genome sequencing and assembly
description This project aimed at investigating the mechanisms of sex-determination in flowering plants as well as the evolutionary mechanisms that lead to the differentiation of the X and Y chromosomes. Because they have evolved sex chromosomes multiple times independently and more or less recently, plants provide a much more complete view of sex chromosome evolution than animal systems. Modification of sexuality is also one of the most important goals for breeding of plant crops.This project focuses on the mechanisms of sex determination in Caucasian persimmon (Diospyros lotus), a diploid tree with sex genetics consistent with heterogametic males (XY). We have assembled male-specific sequence contigs by cataloging short nucleotide sequence patterns unique to males from whole genome sequencing. Expression analysis using mRNA and smRNA-Seq and molecular evolution analyses allowed for the identification of potential candidate genes.We identified an inverted repeat male-specific gene, OGI, which displays high conservation among dioecious species in the Diospyros genus and demonstrated that OGI encodes a small RNA targeting the female-specific MeGI transcription factor. Our results cast light on the organization of a plant Y chromosome and provide a working model for sex determination in Diospyros species.
data type Genome sequencing and assembly
organization
publication
Plant genetics. A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons.
properties 
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dbXrefs
sra-run  SRR1560932SRR1560933SRR1560934SRR1560935SRR1560936SRR1560937SRR1560938SRR1560939SRR1560940SRR1560941 More
sra-submission  SRA180540
biosample  SAMN02943273SAMN02943274SAMN02943275SAMN02943276SAMN02943277SAMN02943278SAMN02943279SAMN02943280SAMN02943281SAMN02943282 More
sra-study  SRP045872
sra-sample  SRS691781SRS691782SRS691783SRS691784SRS691786SRS691785SRS691787SRS691788SRS691789SRS691793 More
sra-experiment  SRX689287SRX689288SRX689289SRX689290SRX689291SRX689292SRX689293SRX689294SRX689295SRX689296 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2014-07-24T00:00:00Z
dateModified 2014-07-24T00:00:00Z
datePublished 2014-11-10T00:00:00Z