home > bioproject > PRJNA30445
identifier PRJNA30445
type bioproject
sameAs
organism marine metagenome
title Marine Synechococcus metagenome isolated from coastal surface water
description Coastal surface water was collected from the end of the pier located at the Scripps Institution of Oceanography, La Jolla, CA on October 10, 2006. A concentrated marine picoplankton sample was by filtration between a size range of 0.45-2.0 .M, and Synechococcus cells were concentrated by flow cytometry. Whole genomic DNA was prepared from the Synechococcus-enriched metagenomic sample, amplified by Genomphi and sequenced by 454 sequencing.

454 sequence data is available from the Short Read Archive (SRA): SRA001124.

The WGS project can be found using the Project data link.

data type Genome sequencing and assembly
organization
publication
Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity.
external link
Metagenomics Book
BLAST against environmental sequences
properties 
{...}
dbXrefs
sra-run  SRR001663
sra-submission  SRA001124
biosample  SAMN00000302
sra-study  SRP000219
sra-sample  SRS000536
sra-experiment  SRX000428
distribution JSONJSON-LD
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bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2008-06-23T00:00:00Z
dateModified 2008-06-23T00:00:00Z
datePublished 2008-08-21T00:00:00Z