home > bioproject > PRJNA347865
identifier PRJNA347865
type bioproject
sameAs
organism uncultured fungus
title Fungal communities across four coastal marine habitats in North Carolina, USA
description Despite nearly a century of study, the diversity of marine fungi remains poorly understood. Historical surveys utilizing microscopy or culture-dependent methods suggest that marine fungi are relatively species-poor, predominantly Dikarya, and localized to coastal habitats. However, the use of high-throughput sequencing technologies to characterize microbial communities has challenged traditional concepts of fungal diversity by revealing novel phylotypes from both terrestrial and aquatic habitats. Here, I used ion semiconductor sequencing (Ion Torrent) of the ribosomal large subunit (LSU/28S) to explore fungal diversity from water and sediment samples collected from four habitats in coastal North Carolina. The dominant taxa observed were Ascomycota and Chytridiomycota, though all fungal phyla were represented. Diversity was highest in sand flats and wetland sediments, though benthic sediments harbored the highest proportion of novel sequences. Most sequences assigned to early-diverging fungal groups could not be assigned beyond phylum with statistical support, suggesting they belong to unknown lineages.
data type targeted loci environmental
organization
publication
properties 
{...}
dbXrefs
sra-run  SRR4428181SRR4428182SRR4428183SRR4428184SRR4428185SRR4428186SRR4428187SRR4428188SRR4428189SRR4428190 More
sra-submission  SRA485460
biosample  SAMN05915308SAMN05915305SAMN05915302SAMN05915307SAMN05915301SAMN05915306SAMN05915314SAMN05915313SAMN05915312SAMN05915311 More
sra-study  SRP091681
sra-sample  SRS1749678SRS1749679SRS1749680SRS1749681SRS1749682SRS1749683SRS1749684SRS1749685SRS1749686SRS1749687 More
sra-experiment  SRX2249704SRX2249705SRX2249706SRX2249707SRX2249708SRX2249709SRX2249710SRX2249711SRX2249712SRX2249713 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2016-10-11T00:00:00Z
dateModified 2016-10-11T00:00:00Z
datePublished