home > bioproject > PRJNA381300
identifier PRJNA381300
type bioproject
sameAs
organism
title fruitENCODE: An encyclopedia of DNA elements for fruit ripening
description Fleshy fruit ripening is an irreversible developmental process that the physiological and biochemical properties of the seed-bearing organ are altered to aid seed dispersal. Significant progress has been made in the model fruit tomato, in which the plant hormone ethylene, fruit specific transcription factors and epigenome reprograming fine tune the ripening processes. The complexity in ripening regulation could be of significant evolutionary advantage, as accidental activation of ripening would attract frugivores prematurely and cause unnecessary seed loss, and the relatively stable epigenome could serve as a checkpoint to prevent ripening before seed maturation. However, as fleshy fruit evolved independently in different plant lineages, it would be naive to consider the observations made in tomato could be universal. The goal of this fruit ENCODE project is to provide a comprehensive annotation of functional elements in not just the tomato genome, but a wide-range of fleshy fruit species in order to examine the diversity of fruit ripening processes.
data type raw sequence reads
organization
zhonglab at CUHK
publication
external link
zhonglab at CUHK
properties 
{...}
dbXrefs
sra-run  SRR5405076SRR5405077SRR5405078SRR5405079SRR5405080SRR5405081SRR5405082SRR5405083SRR5405084SRR5405085 More
sra-submission  SRA550823SRA633660SRA634653SRA721716SRA753473SRA763584SRA795242
biosample  SAMN06673913SAMN06673912SAMN06673911SAMN06673910SAMN06673909SAMN06673908SAMN06673907SAMN06673906SAMN06673905SAMN06673904 More
sra-study  SRP102870
sra-sample  SRS2092135SRS2092136SRS2092137SRS2092138SRS2092139SRS2092140SRS2092141SRS2092142SRS2092143SRS2092144 More
sra-experiment  SRX2697655SRX2697656SRX2697657SRX2697658SRX2697659SRX2697660SRX2697661SRX2697662SRX2697663SRX2697664 More
distribution JSONJSON-LD
Download
bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2017-04-01T00:00:00Z
dateModified 2017-04-01T00:00:00Z
datePublished