home > bioproject > PRJNA74805
identifier PRJNA74805
type bioproject
sameAs
sra-study  SRP003602
organism Homo sapiens
title Whole Genome Sequencing of Triple Negative Breast Cancer
description Breast Cancer Subject Participant ID 700064 (Source Sample names: 6888 and 206). We used massively parallel DNA sequencing technologies to screen entire genomes, in an unbiased manner, for genetic changes associated with tumor growth and metastasis. We describe the complete genome sequence analysis of four DNA samples from a 44-year old African-American patient with basal-like breast cancer: peripheral blood, the primary tumor, a brain metastasis that developed within a year of initial therapy, and a first-passage xenograft derived from the primary tumor. A total of 50 validated mutations were discovered within coding, RNA, or splice site sequences. Of these, 20 mutations were abundantly present in all three tumors, including mutations in CSMD1 and JAK2. These two genes subsequently were found to be mutated in other breast tumors. The metastasis contained two de novo mutations not present in the primary tumor, and was significantly enriched for 20 shared... (for more see dbGaP study page.)
data type Phenotype or Genotype
organization
WASHINGTON UNIVERSITY
publication
Genome remodelling in a basal-like breast cancer metastasis and xenograft.
external link
The Genome Center at Washington University
properties 
{...}
dbXrefs
sra-run  SRR343161SRR343359SRR346173SRR346260
sra-submission  SRA045911SRA045923SRA046055SRA046056
biosample  SAMN00113515SAMN00113516SAMN00113518SAMN00113517
sra-study  SRP003602
sra-sample  SRS115048SRS115049SRS115051SRS115050
sra-experiment  SRX097025SRX097143SRX098153SRX098168
distribution JSONJSON-LD
status public
visibility unrestricted-access
dateCreated 2010-05-28T00:00:00+0000
dateModified 2010-05-28T00:00:00+0000
datePublished 2010-05-28T00:00:00+0000