home > bioproject > PRJNA79827
identifier PRJNA79827
type bioproject
sameAs
organism Populus trichocarpa
title SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing
description IN THIS POPULATION BASED TRANSCRIPTOME ANALYSIS WHOLE MRNA WAS EXTRACTED FROM DEVELOPING XYLEM OF 20 P. TRICHOCARPA NATURAL ACESSIONS AND SEQUENCED WITH ILLUMINA%u2019S GA II ANALYZER AFTER CONVERSION TO CDNA AND PREPARATION OF PAIRED END LIBRARIES. THESE DATA WERE MAPPED TO THE REFERENCE GENOME OF P. TRICHOCARPA (version 2) AND USED TO DISCOVER SNPS IN GENES THAT ARE EXPRESSED DURING WOOD FORMATION.
data type Transcriptome or Gene expression
organization
publication
SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing.
properties 
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dbXrefs
sra-run  SRR072980SRR072990SRR073110SRR073111SRR073112SRR073113SRR073114SRR073115SRR073116SRR073117 More
sra-submission  SRA026096
biosample  SAMN00118173SAMN00118174SAMN00118175SAMN00118176SAMN00118177SAMN00118178SAMN00118179SAMN00118180SAMN00118181SAMN00118182 More
sra-study  SRP004333
sra-sample  SRS119106SRS119107SRS119108SRS119109SRS119110SRS119111SRS119112SRS119113SRS119114SRS119115 More
sra-experiment  SRX031076SRX031086SRX031087SRX031088SRX031089SRX031090SRX031091SRX031092SRX031093SRX031094 More
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status public
visibility unrestricted-access
dateCreated 2011-12-20T00:00:00Z
dateModified 2011-12-20T00:00:00Z
datePublished