home > bioproject > PRJNA80163
identifier PRJNA80163
type bioproject
sameAs
organism Medicago truncatula
title Medicago truncatula Transcriptome or Gene expression
description Legumes (Fabaceae or Leguminosae) are unique among cultivated plants for their ability to carry out endosymbiotic nitrogen fixation with rhizobial bacteria, a process that takes place in a specialized structure known as the nodule. Legumes belong to one of the two main groups of eurosids, the Fabidae, which includes most species capable of endosymbiotic nitrogen fixation 1. Legumes comprise several evolutionary lineages derived from a common ancestor 60 million years ago (Mya). Papilionoids are the largest clade, dating nearly to the origin of legumes and containing most cultivated species 2. Medicago truncatula (Mt) is a long-established model for the study of legume biology. Here we describe the draft sequence of the Mt euchromatin based on a recently completed BAC-assembly supplemented with Illumina-shotgun sequence, together capturing ~94% of all Mt genes. A whole-genome duplication (WGD) approximately 58 Mya played a major role in shaping the Mt genome and thereby contributed to the evolution of endosymbiotic nitrogen fixation. Subsequent to the WGD, the Mt genome experienced higher levels of rearrangement than two other sequenced legumes, Glycine max (Gm) and Lotus japonicus (Lj). Mt is a close relative of alfalfa (M. sativa), a widely cultivated crop with limited genomics tools and complex autotetraploid genetics. As such, the Mt genome sequence provides significant opportunities to expand alfalfa's genomics resources.
data type Transcriptome or Gene expression
organization
publication
properties 
{...}
dbXrefs
sra-run  SRR349692SRR350517SRR350518SRR350519SRR350520SRR350521SRR350538
sra-submission  SRA046354
biosample  SAMN00727821SAMN00727818SAMN00727820SAMN00727822SAMN00727823SAMN00727819
sra-study  SRP008485
sra-sample  SRS265481SRS265478SRS265480SRS265482SRS265483SRS265479
sra-experiment  SRX099060SRX099057SRX099059SRX099061SRX099062SRX099058
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status public
visibility unrestricted-access
dateCreated 2011-12-20T00:00:00Z
dateModified 2011-12-20T00:00:00Z
datePublished