home > bioproject > PRJNA81207
identifier PRJNA81207
type bioproject
sameAs
organism freshwater metagenome
title Bacterial Functional Genes Targeted Locus (Loci)
description Samples were derived from a PCR amplified DNA extract from freshwater Lake Erken.

Beta and alpha diversity patterns of different functional genes including polymerase beta-subunit (rpoB) as core gene and chitinases (chi), nitrate reductases (nirK) and genes involved into oxalate oxidation (frc) as metabolic marker genes. Beta diversity patterns of these genes were markedly different. Alpha diversity seemed to have little predictive significance in explaining the amount of beta diversity within a timeframe. In contrast we found a pronounced trend of increased gene variability covarying with increased beta diversity over the observation timeframe among the metabolic marker genes.

data type targeted loci
organization
publication
properties 
{...}
dbXrefs
sra-run  SRR399288SRR399290SRR399292SRR400431
sra-submission  SRA049306
biosample  SAMN00773168
sra-study  SRP010343
sra-sample  SRS287166
sra-experiment  SRX115978SRX115979SRX115980SRX116473
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2012-01-12T00:00:00Z
dateModified 2012-01-12T00:00:00Z
datePublished