home > biosample > SAMD00002566
identifier SAMD00002566
type biosample
sra-sample  DRS000529
organism rhizosphere metagenome
sample_name  DRS000529
sample comment  General description. Rice plants (Oryza sativa L. cultivar "Nipponbare") were cultivated in paddy fields dressed with standard N (SN; 30 kg ha-1). The roots (approximately 100 g) were sampled on August 26, 2009 and homogenized without surface sterilization to prepare the root-associated bacterial cells, and the bacterial cells were extracted and purified using a bacterial cell enrichment method. Total DNA was extracted from the cell fraction. We amplified 16S rRNA genes using a primer set 27F, 518R. These PCR primers target the V1 and V3 region.
bioproject  PRJDA61421
sra-run  DRR000838
sra-submission  DRA000321
sra-study  DRP000323
sra-sample  DRS000529
sra-experiment  DRX000496
distribution JSONJSON-LD
ddbj_biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2014-05-12T01:17:49+0000
dateModified 2015-10-13T02:45:30+0000
datePublished 2014-01-12T15:00:00+0000