home > biosample > SAMD00009789
identifier SAMD00009789
type biosample
sra-sample  DRS002604
organism Pyrus pyrifolia var. culta
sample_name  DRS002604
sample comment  The ESTs (expressed sequence tags) from Japanese pear (Pyrus pyrifolia) were generated by using pyrosequencing method. Totally, 1,696,898 sequences were obtained. By assemble analysis, the over 40,000 ESTs were generated, and they were compared to genes from several species; apple, strawberry, peach, popular, Arabidopsis and tomato. These comparative analyses with various species shows candidate genes related to characterization of Rosaceae family, fruit enlargement or receptacle enlargement (pome fruits) and lignification. We focused on genes related to sugar metabolism, one of the main factors control the fruit quality. Sequences were identified for almost every gene involved in the pathways, approximately 40 of them were identified as novel sugar-related pear genes. This is an informative resource for identifying genes involved in various biological processes in fruit especially in Rosaceae and in pome fruit.
bioproject  PRJDB546
sra-run  DRR003182DRR003183DRR003184
sra-submission  DRA000757
sra-study  DRP000788
sra-sample  DRS002604
sra-experiment  DRX002516
distribution JSONJSON-LD
ddbj_biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2014-05-12T01:17:49+0000
dateModified 2016-09-01T13:01:47+0000
datePublished 2016-09-01T13:01:46+0000