attributes |
ENA first public |
2011-12-06 |
ENA last update |
2018-03-09 |
ENA-CHECKLIST |
GSC:MIxS v2.1 |
ENA-KEYWORD |
GSC, MIxS, MIMARKS |
External Id |
SAMEA1035269 |
Geographic location (country:region,area) |
France |
INSDC center alias |
University of Geneva |
INSDC center name |
University of Geneva |
INSDC first public |
2011-12-06T11:09:08Z |
INSDC last update |
2018-03-09T09:55:14Z |
INSDC status |
public |
Submitter Id |
july_09_488m_A |
collection date |
2009-07-21 |
elevation |
488 |
enviornmental package |
host-associated |
environment (biome) |
Temperate broadleaf and mixed forest biome ENVO:00000876 |
environment (feature) |
plant-associated habitat ENVO:00009001 |
environment (material) |
phyllosphere |
geographic location (latitude) |
43.09611111 |
geographic location (longitude) |
-0.08555556 |
host common name |
European beech |
host taxid |
28930 |
investigation type |
MIMARKS |
multiplex identifiers |
TGATC |
pcr conditions |
initial denaturation:95degC_5min; 30 cycles of denaturation:95degC_30sec; annealing=54degC_1min; extension=72degC_1min30sec; final extension=72degC_10min |
pcr primers |
ITS2 : CGTATCGCCTCCCTCGCGCCATCAGTGATCGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGATCGCCTTGGTCATTTAGAGGAAGTAA |
plant body site |
adult vascular leaf PO:0006340 |
project name |
gradient_pyrenees |
sample name |
july_09_488m_A |
sequencing method |
Pyrosequencing |
target gene |
ITS1-ITS2 |
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