home > biosample > SAMEA104598854
identifier SAMEA104598854
type biosample
sameAs
sra-sample  ERS2210136
organism human gut metagenome
attributes
ENA first public  2018-02-17
ENA last update  2018-02-16
ENA-CHECKLIST  ERC000011
External Id  SAMEA104598854
INSDC center alias  UCSDMI
INSDC center name  University of California San Diego Microbiome Initiative
INSDC first public  2018-02-17T17:05:12Z
INSDC last update  2018-02-16T18:58:56Z
INSDC status  public
Submitter Id  qiita_sid_10317:10317.000023573
acid_reflux  Diagnosed by a medical professional (doctor, physician assistant)
acne medication  No
acne_medication_otc  No
add_adhd  I do not have this condition
age cat  70+
age years  73
age_corrected  73
alcohol consumption  Yes
alcohol_frequency  Rarely (a few times/month)
alcohol_types  Unspecified
alcohol_types_beercider  No
alcohol_types_red_wine  Yes
alcohol_types_sour_beers  No
alcohol_types_spiritshard_alcohol  Yes
alcohol_types_unspecified  No
alcohol_types_white_wine  Yes
allergic to i have no food allergies that i know of  Yes
allergic_to  Unspecified
allergic_to_other  No
allergic_to_peanuts  No
allergic_to_shellfish  No
allergic_to_tree_nuts  No
allergic_to_unspecified  No
alzheimers  I do not have this condition
anonymized name  000023573
antibiotic_history  I have not taken antibiotics in the past year.
appendix_removed  Yes
artificial_sweeteners  Never
asd  I do not have this condition
assigned_from_geo  Yes
autoimmune  I do not have this condition
birth year  1943
bmi  27.58
bmi_cat  Overweight
bmi_corrected  27.58
body habitat  UBERON:feces
body product  UBERON:feces
body site  UBERON:feces
bowel_movement_frequency  Two
bowel_movement_quality  I tend to have diarrhea (watery stool) - Type 5, 6 and 7
breastmilk_formula_ensure  No
cancer  I do not have this condition
cancer treatment  Unspecified
cardiovascular_disease  I do not have this condition
cat  Yes
cdiff  I do not have this condition
census_region  Unspecified
chickenpox  Yes
clinical condition  Diagnosed by a medical professional (doctor, physician assistant)
collection date  2016-09-15
collection month  September
collection season  Fall
collection time  08:30
collection_timestamp  09/15/2016 08:30
consume_animal_products_abx  No
contraceptive  No
cosmetics_frequency  Regularly (3-5 times/week)
country  Australia
country of birth  Australia
country_residence  Australia
csection  No
deodorant_use  I use an antiperspirant
depression_bipolar_schizophrenia  Unspecified
diabetes  I do not have this condition
diabetes type  Unspecified
diet type  Vegetarian
dna_extracted  Yes
dog  No
dominant hand  I am right handed
drinking_water_source  City
drinks_per_session  1-2
economic_region  Unspecified
elevation  65.1
env biome  dense settlement biome
env feature  human-associated habitat
env package  human-gut
env_material  feces
epilepsy_or_seizure_disorder  I do not have this condition
exercise_frequency  Regularly (3-5 times/week)
exercise_location  Both
fed_as_infant  Primarily breast milk
fermented_plant_frequency  Regularly (3-5 times/week)
flossing_frequency  Daily
flu_vaccine_date  6 months
frozen_dessert_frequency  Never
fruit_frequency  Daily
fungal_overgrowth  I do not have this condition
geo loc name  Australia:NSW
gluten  No
height cm  166
height_units  centimeters
high_fat_red_meat_frequency  Never
homecooked_meals_frequency  Daily
host common name  human
host subject id  6368191733926080813f3ce370fbe85bf9285df51024b53a82c3e9c25534b07e2f12b9c69b887aac5ac01e12171b47110874004a0a3e35519faa26a5255319e1
host taxid  9606
ibd  I do not have this condition
ibd diagnosis  Unspecified
ibd_diagnosis_refined  Unspecified
ibs  Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease  I do not have this condition
lactose  No
last_move  I have lived in my current state of residence for more than a year.
last_travel  I have not been outside of my country of residence in the past year.
latitude  -33.8
level_of_education  Graduate or Professional degree
liver_disease  I do not have this condition
livingwith  No
longitude  151.2
lowgrain_diet_type  Unspecified
lung disease  I do not have this condition
meat_eggs_frequency  Occasionally (1-2 times/week)
mental_illness  Yes
mental_illness_type  Unspecified
mental_illness_type_anorexia_nervosa  No
mental_illness_type_bipolar_disorder  No
mental_illness_type_bulimia_nervosa  No
mental_illness_type_depression  Yes
mental_illness_type_ptsd_posttraumatic_stress_disorder  Yes
mental_illness_type_schizophrenia  No
mental_illness_type_substance_abuse  No
mental_illness_type_unspecified  No
migraine  Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency  Regularly (3-5 times/week)
milk_substitute_frequency  Never
multivitamin  No
nail_biter  No
non_food_allergies  Unspecified
non_food_allergies_beestings  Yes
non_food_allergies_drug_eg_penicillin  No
non_food_allergies_pet_dander  No
non_food_allergies_poison_ivyoak  No
non_food_allergies_sun  No
non_food_allergies_unspecified  No
olive_oil  Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency  Regularly (3-5 times/week)
other_supplement_frequency  Yes
pets_other  No
physical_specimen_location  UCSDMI
physical_specimen_remaining  Yes
pku  I do not have this condition
pool_frequency  Never
poultry_frequency  Never
pregnant  No
prepared_meals_frequency  Rarely (less than once/week)
probiotic_frequency  Occasionally (1-2 times/week)
public  Yes
race  Caucasian
ready_to_eat_meals_frequency  Never
red_meat_frequency  Never
roommates_in_study  Unspecified
salted_snacks_frequency  Never
sample name  qiita_sid_10317:10317.000023573
sample type  Stool
seafood_frequency  Never
seasonal_allergies  No
sex  female
sibo  I do not have this condition
skin_condition  I do not have this condition
sleep_duration  6-7 hours
smoking_frequency  Never
softener  No
specialized_diet  Unspecified
specialized_diet_exclude_dairy  No
specialized_diet_exclude_nightshades  No
specialized_diet_exclude_refined_sugars  No
specialized_diet_fodmap  No
specialized_diet_halaal  No
specialized_diet_i_do_not_eat_a_specialized_diet  Yes
specialized_diet_kosher  No
specialized_diet_modified_paleo_diet  No
specialized_diet_other_restrictions_not_described_here  No
specialized_diet_paleodiet_or_primal_diet  No
specialized_diet_raw_food_diet  No
specialized_diet_unspecified  No
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo  No
state  NSW
subset_age  false
subset_antibiotic_history  true
subset_bmi  true
subset_diabetes  true
subset_healthy  false
subset_ibd  true
sugar_sweetened_drink_frequency  Never
sugary_sweets_frequency  Rarely (less than once/week)
survey_id  f7b6ea23376754b2
teethbrushing_frequency  Daily
thyroid  I do not have this condition
tonsils_removed  Yes
types_of_plants  11 to 20
vegetable_frequency  Daily
vitamin_b_supplement_frequency  Never
vitamin_d_supplement_frequency  Daily
vivid_dreams  Regularly (3-5 times/week)
weight kg  76
weight_change  Increased more than 10 pounds
weight_units  kilograms
whole_eggs  Occasionally (1-2 times/week)
whole_grain_frequency  Occasionally (1-2 times/week)
properties 
{...}
dbXrefs
bioproject  PRJEB11419
sra-run  ERR2306088
sra-submission  ERA1216077
sra-study  ERP012803
sra-sample  ERS2210136
sra-experiment  ERX2357398
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2018-02-20T15:11:47Z
dateModified 2021-08-20T23:45:54Z
datePublished 2018-02-17T00:00:00Z