home > biosample > SAMEA104598860
identifier SAMEA104598860
type biosample
sameAs
sra-sample  ERS2210142
organism human gut metagenome
attributes
ENA first public  2018-02-17
ENA last update  2018-02-16
ENA-CHECKLIST  ERC000011
External Id  SAMEA104598860
INSDC center alias  UCSDMI
INSDC center name  University of California San Diego Microbiome Initiative
INSDC first public  2018-02-17T17:05:12Z
INSDC last update  2018-02-16T18:58:57Z
INSDC status  public
Submitter Id  qiita_sid_10317:10317.000039750
acid_reflux  I do not have this condition
acne medication  No
acne_medication_otc  No
add_adhd  I do not have this condition
age cat  30s
age years  36
age_corrected  36
alcohol consumption  Yes
alcohol_frequency  Rarely (a few times/month)
alcohol_types  Unspecified
alcohol_types_beercider  Yes
alcohol_types_red_wine  No
alcohol_types_sour_beers  Yes
alcohol_types_spiritshard_alcohol  No
alcohol_types_unspecified  No
alcohol_types_white_wine  No
allergic to i have no food allergies that i know of  Yes
allergic_to  Unspecified
allergic_to_other  No
allergic_to_peanuts  No
allergic_to_shellfish  No
allergic_to_tree_nuts  No
allergic_to_unspecified  No
alzheimers  I do not have this condition
anonymized name  000039750
antibiotic_history  I have not taken antibiotics in the past year.
appendix_removed  No
artificial_sweeteners  Never
asd  I do not have this condition
assigned_from_geo  Yes
autoimmune  I do not have this condition
birth year  1981
bmi  35.9
bmi_cat  Obese
bmi_corrected  35.9
body habitat  UBERON:feces
body product  UBERON:feces
body site  UBERON:feces
bowel_movement_frequency  One
bowel_movement_quality  I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure  No
cancer  I do not have this condition
cancer treatment  Unspecified
cardiovascular_disease  I do not have this condition
cat  No
cdiff  I do not have this condition
census_region  West
chickenpox  Yes
clinical condition  I do not have this condition
collection date  2017-08-30
collection month  August
collection season  Summer
collection time  07:10
collection_timestamp  08/30/2017 07:10
consume_animal_products_abx  Yes
contraceptive  No
cosmetics_frequency  Daily
country  USA
country of birth  United States
country_residence  United States
csection  No
deodorant_use  I use deodorant
depression_bipolar_schizophrenia  Unspecified
diabetes  I do not have this condition
diabetes type  Unspecified
diet type  Omnivore
dna_extracted  Yes
dog  No
dominant hand  I am right handed
drinking_water_source  Filtered
drinks_per_session  2-3
economic_region  Far West
elevation  225.8
env biome  dense settlement biome
env feature  human-associated habitat
env package  human-gut
env_material  feces
epilepsy_or_seizure_disorder  I do not have this condition
exercise_frequency  Regularly (3-5 times/week)
exercise_location  Outdoors
fed_as_infant  Primarily breast milk
fermented_plant_frequency  Rarely (less than once/week)
flossing_frequency  Regularly (3-5 times/week)
flu_vaccine_date  I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency  Rarely (less than once/week)
fruit_frequency  Daily
fungal_overgrowth  I do not have this condition
geo loc name  USA:CA
gluten  No
height cm  154
height_units  centimeters
high_fat_red_meat_frequency  Rarely (less than once/week)
homecooked_meals_frequency  Regularly (3-5 times/week)
host common name  human
host subject id  1b0b9e1497832ca0e410cc6863f9a493734a5a44a02baae9697725974f55350ededd21f858bca0b0706dd3ff0d172444513cec3cf99168a55b7a531399c2aeef
host taxid  9606
ibd  I do not have this condition
ibd diagnosis  Unspecified
ibd_diagnosis_refined  Unspecified
ibs  I do not have this condition
kidney_disease  I do not have this condition
lactose  Yes
last_move  I have lived in my current state of residence for more than a year.
last_travel  I have not been outside of my country of residence in the past year.
latitude  33.4
level_of_education  Some college or technical school
liver_disease  I do not have this condition
livingwith  No
longitude  -117.2
lowgrain_diet_type  Unspecified
lung disease  I do not have this condition
meat_eggs_frequency  Daily
mental_illness  No
mental_illness_type  Unspecified
mental_illness_type_anorexia_nervosa  No
mental_illness_type_bipolar_disorder  No
mental_illness_type_bulimia_nervosa  No
mental_illness_type_depression  No
mental_illness_type_ptsd_posttraumatic_stress_disorder  No
mental_illness_type_schizophrenia  No
mental_illness_type_substance_abuse  No
mental_illness_type_unspecified  Yes
migraine  Self-diagnosed
milk_cheese_frequency  Daily
milk_substitute_frequency  Regularly (3-5 times/week)
multivitamin  Yes
nail_biter  No
non_food_allergies  Unspecified
non_food_allergies_beestings  No
non_food_allergies_drug_eg_penicillin  No
non_food_allergies_pet_dander  No
non_food_allergies_poison_ivyoak  No
non_food_allergies_sun  No
non_food_allergies_unspecified  Yes
olive_oil  Daily
one_liter_of_water_a_day_frequency  Daily
other_supplement_frequency  Yes
pets_other  No
physical_specimen_location  UCSDMI
physical_specimen_remaining  Yes
pku  I do not have this condition
pool_frequency  Never
poultry_frequency  Regularly (3-5 times/week)
pregnant  No
prepared_meals_frequency  Occasionally (1-2 times/week)
probiotic_frequency  Rarely (a few times/month)
public  Yes
race  Hispanic
ready_to_eat_meals_frequency  Rarely (less than once/week)
red_meat_frequency  Occasionally (1-2 times/week)
roommates_in_study  No
salted_snacks_frequency  Rarely (less than once/week)
sample name  qiita_sid_10317:10317.000039750
sample type  Stool
seafood_frequency  Rarely (less than once/week)
seasonal_allergies  No
sex  female
sibo  I do not have this condition
skin_condition  I do not have this condition
sleep_duration  6-7 hours
smoking_frequency  Never
softener  No
specialized_diet  Unspecified
specialized_diet_exclude_dairy  No
specialized_diet_exclude_nightshades  No
specialized_diet_exclude_refined_sugars  No
specialized_diet_fodmap  No
specialized_diet_halaal  No
specialized_diet_i_do_not_eat_a_specialized_diet  Yes
specialized_diet_kosher  No
specialized_diet_modified_paleo_diet  No
specialized_diet_other_restrictions_not_described_here  No
specialized_diet_paleodiet_or_primal_diet  No
specialized_diet_raw_food_diet  No
specialized_diet_unspecified  No
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo  No
state  CA
subset_age  true
subset_antibiotic_history  true
subset_bmi  false
subset_diabetes  true
subset_healthy  false
subset_ibd  true
sugar_sweetened_drink_frequency  Never
sugary_sweets_frequency  Rarely (less than once/week)
survey_id  b01a45c00dfe2e78
teethbrushing_frequency  Daily
thyroid  I do not have this condition
tonsils_removed  No
types_of_plants  6 to 10
vegetable_frequency  Daily
vitamin_b_supplement_frequency  Regularly (3-5 times/week)
vitamin_d_supplement_frequency  Regularly (3-5 times/week)
vivid_dreams  Rarely (a few times/month)
weight kg  86
weight_change  Remained stable
weight_units  kilograms
whole_eggs  Regularly (3-5 times/week)
whole_grain_frequency  Daily
properties 
{...}
dbXrefs
bioproject  PRJEB11419
sra-run  ERR2306094ERR5947546ERR5947751ERR5947927ERR5948119
sra-submission  ERA1216077ERA4337927ERA4340507ERA4341457ERA4342243
sra-study  ERP012803
sra-sample  ERS2210142
sra-experiment  ERX2357404ERX5588023ERX5588228ERX5588404ERX5588596
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2018-02-20T15:11:47Z
dateModified 2021-08-20T23:45:55Z
datePublished 2018-02-17T00:00:00Z