home > biosample > SAMEA1879404
identifier SAMEA1879404
type biosample
sameAs
sra-sample　 ERS238577
organism metagenome
attributes
ENA first public　 2013-04-25
ENA last update　 2018-03-09
ENA-CHECKLIST　 ERC000022
ENA-SUBMISSION-TOOL　 SRA-Webin
External Id　 SAMEA1879404
INSDC center alias　 JIC
INSDC center name　 The John Innes Centre
INSDC first public　 2013-04-25T17:02:36Z
INSDC last update　 2018-03-09T10:13:32Z
INSDC status　 public
Submitter Id　 O43
collection date　 2009-03
current land use　 experimental farm plot
current vegetation　 fallow field
depth　 0.01
environment (biome)　 farm
environment (feature)　 soil
environment (material)　 soil
geographic location (countryand/orsea,region)　 United Kingdom
geographic location (elevation)　 12
geographic location (latitude)　 52°62’29”
geographic location (longitude)　 1°21’81”
investigation type　 metagenome
nucleic acid amplification　 Whole transcriptome amplification (Rubicon geneomics)
nucleic acid extraction　 Powersoil RNA isolation
other　 149 mg/kg nitrate (NO3-) 171 mg/kg phosphate (PO43-) 184mg/kg potassium (K+) 60mg/kg magnesium (Mg2+)
ph　 7.49
project name　 Rhizosphere metatranscriptomics
sample name　 O43
sample weight for DNA extraction　 1
sequencing method　 454 FLX titanium
soil environmental package　 soil
storage conditions (fresh/frozen/other)　 fresh
total organic carbon　 0.23
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB1820
sra-run　 ERR263027
sra-submission　 ERA207876
sra-study　 ERP002497
sra-sample　 ERS238577
sra-experiment　 ERX237545
distribution JSONJSON-LD
Download
biosample_set.xml.gz　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2013-05-01T08:08:06Z
dateModified 2021-08-21T01:36:03Z
datePublished 2013-04-25T00:00:00Z