home > biosample > SAMEA2591060
identifier SAMEA2591060
type biosample
sameAs
sra-sample  ERS477934
organism marine metagenome
attributes
Alias  TARA_A200000123
Chlorophyll Sensor  0.0812
Citation  tbd
Depth  5
Description  This sample (TARA_A200000123) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-09-23T12:50Z at station TARA_007 (latitudeN=37.051, longitudeE=1.9378) from a surface water (ENVO:00002042) layer at a depth of 3-7 m, using a PUMP (High Volume Peristaltic Pump). The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (0.8-5 micrometres) and preserved on board in liquid nitrogen for later phylogenetic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods. This sample has replicate sample(s): TARA_A200000124.
ENA checklist  ERC000030
Environment (Biome)  marine biome (ENVO:00000447)
Environment (Feature)  surface water (ENVO:00002042) layer
Environment (Material)  particulate matter, including plankton (ENVO:xxxxxxxx)
Environmental Package  water
Event Date/Time End  2009-09-23T13:00Z
Event Date/Time Start  2009-09-23T12:50Z
Event Label  TARA_20090923T1250Z_007_EVENT_PUMP
Further Details  tbd
INSDC center alias  GSC
INSDC center name  Genoscope
INSDC first public  2014-06-26T17:01:30Z
INSDC last update  2014-11-06T09:10:07Z
INSDC status  public
Last Update Date  2014-03-01Z
Latitude End  37.0465
Latitude Start  37.051
Longitude End  1.9426
Longitude Start  1.9378
Marine Region  (search radius=5 degree) Marine Ecoregion:Western Mediterranean (MRGID:21896), Marine Ecoregion:Alboran Sea (MRGID:3324)
Nitrate Sensor  99999
Oxygen Sensor  99999
Project Name  Tara Oceans
Protocol Label  PROT_NUC-DNA(100L)_W0.8-5
SRA accession  ERS477934
Salinity Sensor  37.4911
Sample Collection Device  PUMP (High Volume Peristaltic Pump)
Sample Name  ERS477934
Sample Status  This version is NOT FINAL but can be used to provide data discovery services
Sampling Campaign  TARA_20090919Z
Sampling Platform  SV Tara
Sampling Station  TARA_007
Size Fraction Lower Threshold  0.8
Size Fraction Upper Threshold  5
Temperature  23.82575
Title  TARA_20090923T1250Z_007_EVENT_PUMP_P_S_(5-7m)_PROT_NUC-DNA(100L)_W0.8-5_TARA_A200000123
properties 
{...}
dbXrefs
bioproject  PRJEB16766PRJEB6605PRJEB6610PRJEB7315
sra-run  ERR1718044ERR1718796ERR550396ERR550403ERR562530ERR654518
sra-submission  ERA744327ERA323213ERA329958ERA369218
sra-study  ERP018626ERP006152ERP006157ERP007024
sra-sample  ERS477934
sra-experiment  ERX1788257ERX1789009ERX509471ERX509456ERX521748ERX610841
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2014-06-27T08:06:51Z
dateModified 2019-04-16T23:41:43Z
datePublished 2014-06-26T00:00:00Z