home > biosample > SAMEA2611385
identifier SAMEA2611385
type biosample
sameAs
sra-sample  ERS478008
organism marine metagenome
attributes
Alias  TARA_A100000548
Chlorophyll Sensor  0.0276
Citation  tbd
Depth  5
Description  This sample (TARA_A100000548) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-11-18T12:56Z at station TARA_023 (latitudeN=42.1735, longitudeE=17.7175) from a surface water (ENVO:00002042) layer at a depth of 3-7 m, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (20-180 micrometres) and preserved on board in liquid nitrogen for later phylogenetic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.
ENA checklist  ERC000030
Environment (Biome)  marine biome (ENVO:00000447)
Environment (Feature)  surface water (ENVO:00002042) layer
Environment (Material)  particulate matter, including plankton (ENVO:xxxxxxxx)
Environmental Package  water
Event Date/Time End  2009-11-18T13:23Z
Event Date/Time Start  2009-11-18T12:56Z
Event Label  TARA_20091118T1256Z_023_EVENT_NET
Further Details  tbd
INSDC center alias  GSC
INSDC center name  Genoscope
INSDC first public  2014-06-23T17:00:58Z
INSDC last update  2014-11-06T09:09:25Z
INSDC status  public
Last Update Date  2014-05-01Z
Latitude End  42.1715
Latitude Start  42.1735
Longitude End  17.7178
Longitude Start  17.7175
Marine Region  (search radius=5 degree) Marine Ecoregion:Adriatic Sea (MRGID:3314), Marine Ecoregion:Ionian Sea (MRGID:3351)
Nitrate Sensor  99999
Oxygen Sensor  222.914083
Project Name  Tara Oceans
Protocol Label  PROT_NUC-DNA(1L)_N20-180
SRA accession  ERS478008
Salinity Sensor  38.215158
Sample Collection Device  PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5
Sample Name  ERS478008
Sample Status  This version is NOT FINAL but can be used to provide data discovery services
Sampling Campaign  TARA_20091111Z
Sampling Platform  SV Tara
Sampling Station  TARA_023
Size Fraction Lower Threshold  20
Size Fraction Upper Threshold  180
Temperature  17.007383
Title  TARA_20091118T1256Z_023_EVENT_NET_N1+N2_S_(3-7m)_PROT_NUC-DNA(1L)_N20-180_TARA_A100000548
properties 
{...}
dbXrefs
bioproject  PRJEB16766PRJEB4352PRJEB6609PRJEB6610
sra-run  ERR1717990ERR538171ERR550532ERR562472
sra-submission  ERA744327ERA320049ERA323266ERA329958
sra-study  ERP018626ERP003628ERP006156ERP006157
sra-sample  ERS478008
sra-experiment  ERX1788203ERX503381ERX509584ERX521526
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2014-06-25T08:08:48Z
dateModified 2019-04-17T02:46:53Z
datePublished 2014-06-23T00:00:00Z