home > biosample > SAMEA2661639
identifier SAMEA2661639
type biosample
sameAs
sra-sample  ERS506046
organism marine metagenome
attributes
Alias  TARA_A100000700
Chlorophyll Sensor  0.228614
Citation  tbd
Depth  200
Description  This sample (TARA_A100000700) was collected during the Tara Oceans Expedition (2009-2013) at station TARA_022 (latitudeN=39.8607, longitudeE=17.4105) on date/time=2009-11-16T09:37, using a PLANKTON NET, TYPE=Bongo, MESH_Size_(µm)=180, MOUTH_Opening_(m^2)=0.258319, LENGTH_(m)=3. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 198-202 m, targeting a deep chlorophyll maximum layer (ENVO:xxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (180-2000 micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics analysis. This sample has no replicate.
ENA checklist  ERC000030
Environment (Biome)  marine biome (ENVO:00000447)
Environment (Feature)  deep chlorophyll maximum layer (ENVO:xxxxxxxx)
Environment (Material)  particulate matter, including plankton (ENVO:xxxxxxxx)
Environmental Package  water
Event Date/Time End  2009-11-16T09:54
Event Date/Time Start  2009-11-16T09:37
Event Label  TARA_20091116T0937Z_022_EVENT_NET
Further Details  tbd
INSDC center alias  GSC
INSDC center name  Genoscope
INSDC first public  2014-07-18T17:01:27Z
INSDC last update  2014-07-16T10:43:19Z
INSDC status  public
Last Update Date  2014-05-01Z
Latitude End  39.8593
Latitude Start  39.8607
Longitude End  17.4088
Longitude Start  17.4105
Marine Region  (search radius=5 degrees) Marine Province:Mediterranean Sea (MRGID:8552), Marine Ecoregion:Adriatic Sea (MRGID:3314), Marine Ecoregion:Ionian Sea (MRGID:3351)
Nitrate Sensor  99999
Oxygen Sensor  220.987333
Project Name  Tara Oceans expedition (2009-2013)
Protocol Label  PROT_NUC-DNA_N180-2000
SRA accession  ERS506046
Salinity Sensor  38.116167
Sample Collection Device  PLANKTON NET, TYPE=Bongo, MESH_Size_(µm)=180, MOUTH_Opening_(m^2)=0.258319, LENGTH_(m)=3
Sample Name  ERS506046
Sample Status  This version can be used to provide data discovery services
Sampling Campaign  TARA_20091111Z
Sampling Platform  SV Tara
Sampling Station  TARA_022
Size Fraction Lower Threshold  180
Size Fraction Upper Threshold  2000
Temperature  17.256933
Title  TARA_20091116T0937Z_022_EVENT_NET_N_D_(200 m)_PROT_NUC-DNA_N180-2000_TARA_A100000700
properties 
{...}
dbXrefs
bioproject  PRJEB6609PRJEB16766PRJEB4352PRJEB6610
sra-run  ERR1712074ERR1712148ERR1718158ERR1726718ERR566174
sra-submission  ERA741617ERA744327ERA763626ERA332236
sra-study  ERP006156ERP018626ERP003628ERP006157
sra-sample  ERS506046
sra-experiment  ERX1782252ERX1782139ERX1788371ERX1796926ERX525163
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2014-07-19T08:06:24Z
dateModified 2019-04-17T11:16:45Z
datePublished 2014-07-18T00:00:00Z