home > biosample > SAMEA2673230
identifier SAMEA2673230
type biosample
sameAs
sra-sample　 ERS514165
organism uncultured bacterium
attributes
ENA first public　 2014-09-27
ENA last update　 2016-10-21
ENA-CHECKLIST　 ERC000024
External Id　 SAMEA2673230
INSDC center alias　 VTT
INSDC center name　 VTT Technical Research Centre of Finland
INSDC first public　 2014-09-27T17:04:03Z
INSDC last update　 2016-10-21T09:43:57Z
INSDC status　 public
Submitter Id　 OL-KR49B
adapters　 CGTATCGCCTCCCTCGCGCCATCAG, CTATGCGCCTTGCCAGCCCGCTCAG
alkalinity　 0.16
calcium　 2700
chloride　 9940
collection date　 2009-12-14
conductivity　 2670
environment (biome)　 aquifer
environment (feature)　 saline groundwater
environment (material)　 water
geographic location (country and/or sea)　 Finland
geographic location (depth)　 415
geographic location (latitude)　 61.23694444
geographic location (longitude)　 21.44083333
geographic location (region and locality)　 Olkiluoto
investigation type　 metagenome
magnesium　 0.0008
multiplex identifiers　 ACACTG
nucleic acid extraction　 MoBio Power water RNA extraction kit
organism count　 15000 / ml
oxygenation status of sample　 anaerobic
pcr primers　 AGAGTTTGATCCTGGCTCAG
ph　 8.1
project name　 DeepOlki
sample collection device or method　 pumping
sample material processing　 concentration by filtration
sample name　 OL-KR49B
sample volume or weight for DNA extraction　 1000
sequencing method　 454 Titanium
source material identifiers　 groundwater
water environmental package　 water
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB6874
sra-run　 ERR571293
sra-submission　 ERA337217
sra-study　 ERP006516
sra-sample　 ERS514165
sra-experiment　 ERX530282
distribution JSONJSON-LD
Download
biosample_set.xml.gz　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2014-09-28T08:05:47Z
dateModified 2021-08-21T03:14:24Z
datePublished 2014-09-27T00:00:00Z