home > biosample > SAMEA3493153
identifier SAMEA3493153
type biosample
sameAs
sra-sample  ERS800302
organism Influenza A virus
attributes
ENA first public  2016-02-17
ENA last update  2016-10-21
ENA-CHECKLIST  ERC000032
External Id  SAMEA3493153
INSDC center alias  Animal and Plant Health Agency (APHA)
INSDC center name  Animal and Plant Health Agency (APHA)
INSDC first public  2016-02-17T17:03:03Z
INSDC last update  2016-10-21T09:45:49Z
INSDC status  public
Submitter Id  AVP-14-036255
collecting institution  APHA
collection date  2014-11-14
collector name  APHA
definition for seropositive sample  Ct >36 for RRT PCR, >1/16 HI titre with 4HAU antigen
geographic location (country and/or sea)  United Kingdom
geographic location (latitude)  54.001
geographic location (longitude)  -0.434
geographic location (region and locality)  East Yorkshire
host age  60
host behaviour  domestic
host common name  Domestic duck
host disease outcome  dead
host habitat  domestic:indoor farm
host health state  diseased
host scientific name  Anas platyrhynchos
host sex  female
host subject id  #1
influenza test method  M gene RRT PCR, H5 RRT PCR, virus isolation and haemagglutinin inhbition
influenza test result  positive
influenza virus type  A
isolation source host associated  pooled intestines
other pathogens test result  negative
other pathogens tested  AMPV-1
receipt date  2014-11-15
sample capture status  active surveillance not initiated by an outbreak
sample name  AVP-14-036255
serotype (required for a seropositive sample)  H5N8
virus identifier  A/duck/England/36254/14
properties 
{...}
dbXrefs
bioproject  PRJEB12582PRJEB9687PRJEB9846
sra-run  ERR1293054ERR2984276ERR2985802ERR2985803ERR2985804ERR2992675ERR2992676ERR2992677ERR926712ERR926713 More
sra-submission  ERA565932ERA1676289ERA1684787ERA1695547ERA450073ERA461412
sra-study  ERP014070ERP010823ERP010994
sra-sample  ERS800302
sra-experiment  ERX1364626ERX2986848ERX2988324ERX2988325ERX2988326ERX2995084ERX2995085ERX2995086ERX1005987ERX1005988 More
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-02-22T12:05:44Z
dateModified 2021-08-21T06:35:50Z
datePublished 2016-02-17T00:00:00Z