| ENA first public |
2015-10-23 |
| ENA last update |
2017-08-05 |
| ENA-CHECKLIST |
ERC000011 |
| External Id |
SAMEA3632812 |
| INSDC center alias |
UCSDMI |
| INSDC center name |
University of California San Diego Microbiome Initiative |
| INSDC first public |
2015-10-23T17:01:30Z |
| INSDC last update |
2017-08-05T17:26:58Z |
| INSDC status |
public |
| Submitter Id |
qiita_sid_10317:10317.000002247 |
| acid_reflux |
Not provided |
| acne medication |
false |
| acne_medication_otc |
false |
| add_adhd |
Self-diagnosed |
| age cat |
50s |
| age years |
59 |
| age_corrected |
59 |
| alcohol consumption |
false |
| alcohol_frequency |
Never |
| alcohol_types |
Not provided |
| alcohol_types_beercider |
false |
| alcohol_types_red_wine |
false |
| alcohol_types_sour_beers |
false |
| alcohol_types_spiritshard_alcohol |
false |
| alcohol_types_unspecified |
true |
| alcohol_types_white_wine |
false |
| allergic to i have no food allergies that i know of |
true |
| allergic_to |
Not provided |
| allergic_to_other |
false |
| allergic_to_peanuts |
false |
| allergic_to_shellfish |
false |
| allergic_to_tree_nuts |
false |
| allergic_to_unspecified |
false |
| alzheimers |
I do not have this condition |
| anonymized name |
000002247 |
| antibiotic_history |
I have not taken antibiotics in the past year. |
| appendix_removed |
false |
| artificial_sweeteners |
Not provided |
| asd |
I do not have this condition |
| autoimmune |
Self-diagnosed |
| birth year |
1956 |
| bmi |
23.86 |
| bmi_cat |
Normal |
| bmi_corrected |
Not provided |
| body habitat |
UBERON:feces |
| body product |
UBERON:feces |
| body site |
UBERON:feces |
| bowel_movement_frequency |
One |
| bowel_movement_quality |
I tend to have normal formed stool |
| breastmilk_formula_ensure |
false |
| cancer |
Not provided |
| cancer treatment |
Not provided |
| cardiovascular_disease |
I do not have this condition |
| cat |
false |
| cdiff |
Not provided |
| census_region |
South |
| chickenpox |
Yes |
| clinical condition |
I do not have this condition |
| collection date |
2015-05-20 |
| collection month |
May |
| collection season |
Spring |
| collection time |
08:00 |
| collection_timestamp |
2015-05-20 08:00 |
| consume_animal_products_abx |
Not sure |
| contraceptive |
No |
| cosmetics_frequency |
Occasionally (1-2 times/week) |
| country |
USA |
| country of birth |
United States |
| country_residence |
Not provided |
| csection |
false |
| deodorant_use |
Not sure, but I use some form of deodorant/antiperspirant |
| depression_bipolar_schizophrenia |
I do not have this condition |
| diabetes |
Self-diagnosed |
| diabetes type |
Not provided |
| diet type |
Not provided |
| dna_extracted |
true |
| dog |
true |
| dominant hand |
I am right handed |
| drinking_water_source |
Bottled |
| drinks_per_session |
Not provided |
| economic_region |
Southeast |
| elevation |
5.2 |
| env biome |
dense settlement biome |
| env feature |
human-associated habitat |
| env package |
human-gut |
| env_material |
feces |
| epilepsy_or_seizure_disorder |
I do not have this condition |
| exercise_frequency |
Rarely (a few times/month) |
| exercise_location |
Indoors |
| fed_as_infant |
Primarily breast milk |
| fermented_plant_frequency |
Occasionally (1-2 times/week) |
| flossing_frequency |
Daily |
| flu_vaccine_date |
I have not gotten the flu vaccine in the past year. |
| frozen_dessert_frequency |
Occasionally (1-2 times/week) |
| fruit_frequency |
Rarely (less than once/week) |
| fungal_overgrowth |
Self-diagnosed |
| geo loc name |
USA |
| gluten |
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease |
| has_physical_specimen |
true |
| height cm |
162 |
| height_units |
centimeters |
| high_fat_red_meat_frequency |
Occasionally (1-2 times/week) |
| homecooked_meals_frequency |
Occasionally (1-2 times/week) |
| host common name |
human |
| host subject id |
5d5efcc7c3ff1ef4e108080625ff250f9bf7bc38ec046c53b35855b29884855652769fe2626a5c0d22184bf59ffa637462616ef866d4782f85aaf93ef2965869 |
| host taxid |
9606 |
| ibd |
I do not have this condition |
| ibd diagnosis |
Not provided |
| ibd_diagnosis_refined |
Not provided |
| ibs |
I do not have this condition |
| kidney_disease |
I do not have this condition |
| lactose |
false |
| last_move |
I have lived in my current state of residence for more than a year. |
| last_travel |
Month |
| latitude |
26.4 |
| level_of_education |
Associate's degree |
| liver_disease |
I do not have this condition |
| livingwith |
No |
| longitude |
-80.2 |
| lowgrain_diet_type |
false |
| lung disease |
I do not have this condition |
| meat_eggs_frequency |
Occasionally (1-2 times/week) |
| mental_illness |
Not provided |
| mental_illness_type |
Not provided |
| mental_illness_type_anorexia_nervosa |
Not provided |
| mental_illness_type_bipolar_disorder |
Not provided |
| mental_illness_type_bulimia_nervosa |
Not provided |
| mental_illness_type_depression |
Not provided |
| mental_illness_type_ptsd_posttraumatic_stress_disorder |
Not provided |
| mental_illness_type_schizophrenia |
Not provided |
| mental_illness_type_substance_abuse |
Not provided |
| mental_illness_type_unspecified |
Not provided |
| migraine |
I do not have this condition |
| milk_cheese_frequency |
Rarely (less than once/week) |
| milk_substitute_frequency |
Regularly (3-5 times/week) |
| multivitamin |
false |
| nail_biter |
false |
| non_food_allergies |
Not provided |
| non_food_allergies_beestings |
false |
| non_food_allergies_drug_eg_penicillin |
false |
| non_food_allergies_pet_dander |
false |
| non_food_allergies_poison_ivyoak |
false |
| non_food_allergies_sun |
false |
| non_food_allergies_unspecified |
true |
| olive_oil |
Rarely (less than once/week) |
| one_liter_of_water_a_day_frequency |
Rarely (less than once/week) |
| other_supplement_frequency |
true |
| pets_other |
Not provided |
| physical_specimen_location |
UCSDMI |
| physical_specimen_remaining |
true |
| pku |
I do not have this condition |
| pool_frequency |
Rarely (a few times/month) |
| poultry_frequency |
Regularly (3-5 times/week) |
| pregnant |
false |
| prepared_meals_frequency |
Occasionally (1-2 times/week) |
| probiotic_frequency |
Regularly (3-5 times/week) |
| public |
true |
| race |
Caucasian |
| ready_to_eat_meals_frequency |
Never |
| red_meat_frequency |
Rarely (less than once/week) |
| roommates_in_study |
No |
| salted_snacks_frequency |
Regularly (3-5 times/week) |
| sample name |
qiita_sid_10317:10317.000002247 |
| sample type |
Stool |
| seafood_frequency |
Rarely (less than once/week) |
| seasonal_allergies |
Not provided |
| sex |
female |
| sibo |
Self-diagnosed |
| skin_condition |
I do not have this condition |
| sleep_duration |
7-8 hours |
| smoking_frequency |
Never |
| softener |
false |
| specialized_diet |
Not provided |
| specialized_diet_exclude_dairy |
Not provided |
| specialized_diet_exclude_nightshades |
Not provided |
| specialized_diet_exclude_refined_sugars |
Not provided |
| specialized_diet_fodmap |
Not provided |
| specialized_diet_halaal |
Not provided |
| specialized_diet_i_do_not_eat_a_specialized_diet |
Not provided |
| specialized_diet_kosher |
Not provided |
| specialized_diet_modified_paleo_diet |
Not provided |
| specialized_diet_other_restrictions_not_described_here |
Not provided |
| specialized_diet_paleodiet_or_primal_diet |
Not provided |
| specialized_diet_raw_food_diet |
Not provided |
| specialized_diet_unspecified |
Not provided |
| specialized_diet_westenprice_or_other_lowgrain_low_processed_fo |
Not provided |
| state |
FL |
| subset_age |
true |
| subset_antibiotic_history |
true |
| subset_bmi |
true |
| subset_diabetes |
false |
| subset_healthy |
false |
| subset_ibd |
true |
| sugar_sweetened_drink_frequency |
Never |
| sugary_sweets_frequency |
Regularly (3-5 times/week) |
| survey_id |
f0994d720ff8a89d |
| teethbrushing_frequency |
Daily |
| thyroid |
Self-diagnosed |
| tonsils_removed |
false |
| types_of_plants |
Not provided |
| vegetable_frequency |
Occasionally (1-2 times/week) |
| vioscreen_a_bev |
0 |
| vioscreen_a_cal |
0 |
| vioscreen_acesupot |
0 |
| vioscreen_activity_level |
Not provided |
| vioscreen_add_sug |
15.93649267 |
| vioscreen_addsugar |
92.06706978 |
| vioscreen_adsugtot |
70.07389234 |
| vioscreen_age |
215 |
| vioscreen_alanine |
2.964876525 |
| vioscreen_alcohol |
0.010630137 |
| vioscreen_alcohol_servings |
0 |
| vioscreen_alphacar |
1870.145719 |
| vioscreen_alphtoce |
15.8740823 |
| vioscreen_alphtoco |
14.26553537 |
| vioscreen_arginine |
4.126492937 |
| vioscreen_ash |
16.62424952 |
| vioscreen_aspartam |
0 |
| vioscreen_aspartic |
6.307369702000001 |
| vioscreen_avcarb |
185.4444563 |
| vioscreen_bcodeid |
Not provided |
| vioscreen_betacar |
8572.058904000001 |
| vioscreen_betacryp |
27.37274187 |
| vioscreen_betaine |
64.94803617 |
| vioscreen_betatoco |
0.533945246 |
| vioscreen_biochana |
0.013315068000000001 |
| vioscreen_bmi |
Not provided |
| vioscreen_caffeine |
135.7493151 |
| vioscreen_calcium |
Not provided |
| vioscreen_calcium_avg |
Not provided |
| vioscreen_calcium_dose |
Not provided |
| vioscreen_calcium_freq |
Not provided |
| vioscreen_calcium_from_dairy_servings |
0.93 |
| vioscreen_calcium_servings |
2.2223 |
| vioscreen_calories |
1838.4727739999998 |
| vioscreen_carbo |
207.2673159 |
| vioscreen_cholest |
207.2358519 |
| vioscreen_choline |
298.03505989999996 |
| vioscreen_clac9t11 |
0.084876711 |
| vioscreen_clat10c12 |
0.019178082 |
| vioscreen_copper |
1.333096021 |
| vioscreen_coumest |
0.09863013699999999 |
| vioscreen_cystine |
0.819671213 |
| vioscreen_d_cheese |
0.19879451399999998 |
| vioscreen_d_milk |
0.6698904379999999 |
| vioscreen_d_tot_soym |
1.0712328770000001 |
| vioscreen_d_total |
0.930000033 |
| vioscreen_d_yogurt |
0.057506849000000006 |
| vioscreen_daidzein |
1.666383675 |
| vioscreen_database |
NDSR - V44 |
| vioscreen_delttoco |
2.186575443 |
| vioscreen_discfat_oil |
45.17473245 |
| vioscreen_discfat_sol |
28.53870933 |
| vioscreen_dob |
1/1/1800 |
| vioscreen_eer |
Not provided |
| vioscreen_email |
Not provided |
| vioscreen_erythr |
0.00005479999999999999 |
| vioscreen_f_citmlb |
0.077315072 |
| vioscreen_f_nj_citmlb |
0.069780825 |
| vioscreen_f_nj_other |
0.248630137 |
| vioscreen_f_nj_total |
0.318684972 |
| vioscreen_f_other |
0.248630137 |
| vioscreen_f_total |
0.326246622 |
| vioscreen_fat |
91.87653039 |
| vioscreen_fiber |
21.67433112 |
| vioscreen_fibh2o |
5.702739726 |
| vioscreen_fibinso |
15.94391722 |
| vioscreen_finished |
5/20/15 |
| vioscreen_fish_servings |
2.4584599999999996 |
| vioscreen_fol_deqv |
339.37163960000004 |
| vioscreen_fol_nat |
250.6135488 |
| vioscreen_fol_syn |
52.1900899 |
| vioscreen_formontn |
0.0034246579999999997 |
| vioscreen_fried_fish_servings |
0 |
| vioscreen_fried_food_servings |
0.17159000000000002 |
| vioscreen_frt5_day |
0.2 |
| vioscreen_frtsumm |
0.7 |
| vioscreen_fructose |
19.76030073 |
| vioscreen_fruit_servings |
0.2137 |
| vioscreen_g_nwhl |
2.435123308 |
| vioscreen_g_total |
3.1889588239999997 |
| vioscreen_g_whl |
0.7538355999999999 |
| vioscreen_galactos |
0.947862933 |
| vioscreen_gammtoco |
13.38090753 |
| vioscreen_gender |
false |
| vioscreen_genistn |
2.134137214 |
| vioscreen_glac |
91.35303938 |
| vioscreen_gltc |
98.19156678 |
| vioscreen_glucose |
24.69509578 |
| vioscreen_glutamic |
12.04468509 |
| vioscreen_glycine |
2.796109636 |
| vioscreen_glycitn |
0.305123274 |
| vioscreen_grams |
1768.4832190000002 |
| vioscreen_hei2010_dairy |
4.5 |
| vioscreen_hei2010_empty_calories |
13.8 |
| vioscreen_hei2010_fatty_acids |
9.8 |
| vioscreen_hei2010_fruit |
1.1 |
| vioscreen_hei2010_greens_beans |
5 |
| vioscreen_hei2010_protien_foods |
5 |
| vioscreen_hei2010_refined_grains |
10 |
| vioscreen_hei2010_score |
67 |
| vioscreen_hei2010_sea_foods_plant_protiens |
5 |
| vioscreen_hei2010_sodium |
2.9 |
| vioscreen_hei2010_veg |
5 |
| vioscreen_hei2010_whole_fruit |
2.2 |
| vioscreen_hei2010_whole_grains |
2.7 |
| vioscreen_hei_drk_g_org_veg_leg |
5 |
| vioscreen_hei_fruit |
1.1 |
| vioscreen_hei_grains |
2.9 |
| vioscreen_hei_meat_beans |
10 |
| vioscreen_hei_milk |
4.5 |
| vioscreen_hei_non_juice_frt |
2.2 |
| vioscreen_hei_oils |
10 |
| vioscreen_hei_sat_fat |
4.8 |
| vioscreen_hei_score |
63.5 |
| vioscreen_hei_sodium |
2.3 |
| vioscreen_hei_sol_fat_alc_add_sug |
14.3 |
| vioscreen_hei_veg |
5 |
| vioscreen_hei_whl_grains |
1.4 |
| vioscreen_height |
Not provided |
| vioscreen_histidin |
1.632959152 |
| vioscreen_inositol |
0.07610958599999999 |
| vioscreen_iron |
9.970629548 |
| vioscreen_isoleuc |
2.6895616510000004 |
| vioscreen_isomalt |
0 |
| vioscreen_joules |
7692.170548 |
| vioscreen_juice_servings |
0.015119999999999998 |
| vioscreen_lactitol |
0 |
| vioscreen_lactose |
8.914219017999999 |
| vioscreen_legumes |
0.15931506199999998 |
| vioscreen_leucine |
4.744603823 |
| vioscreen_line_gi |
417.7166096 |
| vioscreen_low_fat_dairy_serving |
0.10189 |
| vioscreen_lutzeax |
4695.434247 |
| vioscreen_lycopene |
6900.065068000001 |
| vioscreen_lysine |
3.92739726 |
| vioscreen_m_egg |
0.526054821 |
| vioscreen_m_fish_hi |
0.757698623 |
| vioscreen_m_fish_lo |
0.643260297 |
| vioscreen_m_frank |
0.18701368399999999 |
| vioscreen_m_meat |
0.241178079 |
| vioscreen_m_mpf |
2.561945333 |
| vioscreen_m_nutsd |
3.3256712189999997 |
| vioscreen_m_organ |
0 |
| vioscreen_m_poult |
0.7327945240000001 |
| vioscreen_m_soy |
0.163808211 |
| vioscreen_magnes |
321.8860659 |
| vioscreen_maltitol |
0 |
| vioscreen_maltose |
6.289041096 |
| vioscreen_mangan |
3.168930932 |
| vioscreen_mannitol |
0.27632879 |
| vioscreen_methhis3 |
8.998959225 |
| vioscreen_methion |
1.316904063 |
| vioscreen_mfa141 |
0.017452056 |
| vioscreen_mfa161 |
0.849725927 |
| vioscreen_mfa181 |
34.98207673 |
| vioscreen_mfa201 |
0.60652052 |
| vioscreen_mfa221 |
0.128986285 |
| vioscreen_mfatot |
36.7637789 |
| vioscreen_multi_calcium_avg |
57 |
| vioscreen_multi_calcium_dose |
200 |
| vioscreen_multivitamin |
true |
| vioscreen_multivitamin_freq |
2 |
| vioscreen_natoco |
14.23602981 |
| vioscreen_nccglbr |
173.82101880000002 |
| vioscreen_nccglgr |
121.58186 |
| vioscreen_niacin |
19.12315122 |
| vioscreen_niacineq |
30.99145709 |
| vioscreen_nitrogen |
10.39695995 |
| vioscreen_non_fried_fish_servings |
2.4584599999999996 |
| vioscreen_nutrient_recommendation |
Default |
| vioscreen_omega3 |
2.392329135 |
| vioscreen_oxalic |
258.9231378 |
| vioscreen_oxalicm |
284.0479452 |
| vioscreen_pantothe |
4.597095395 |
| vioscreen_pectins |
3.748000388 |
| vioscreen_pfa182 |
21.45172571 |
| vioscreen_pfa183 |
1.9969863680000002 |
| vioscreen_pfa184 |
0.029178084 |
| vioscreen_pfa204 |
0.097643834 |
| vioscreen_pfa205 |
0.106684907 |
| vioscreen_pfa225 |
0.040219179 |
| vioscreen_pfa226 |
0.219534239 |
| vioscreen_pfatot |
24.06739619 |
| vioscreen_phenylal |
2.849452189 |
| vioscreen_phosphor |
1091.790925 |
| vioscreen_phytic |
801.4185788 |
| vioscreen_pinitol |
0.070657537 |
| vioscreen_potass |
2494.37363 |
| vioscreen_procdate |
10/28/15 |
| vioscreen_proline |
3.624383963 |
| vioscreen_protanim |
32.1088506 |
| vioscreen_protein |
62.78664384 |
| vioscreen_protocol |
Knight Lab, University of Colorado Boulder |
| vioscreen_protveg |
30.67896244 |
| vioscreen_questionnaire |
Egg White Standard Questionnaire (V3) |
| vioscreen_recno |
434 |
| vioscreen_retinol |
264.2684075 |
| vioscreen_rgrain |
2.180164243 |
| vioscreen_ribofla |
1.444109522 |
| vioscreen_sacchar |
0 |
| vioscreen_salad_vegetable_servings |
1.3421100000000001 |
| vioscreen_satoco |
0.064684933 |
| vioscreen_selenium |
98.64643622 |
| vioscreen_serine |
3.1038353489999997 |
| vioscreen_sfa100 |
0.447753446 |
| vioscreen_sfa120 |
0.810054748 |
| vioscreen_sfa140 |
1.8971509119999999 |
| vioscreen_sfa160 |
13.30369622 |
| vioscreen_sfa170 |
0.08712328 |
| vioscreen_sfa180 |
5.521589389 |
| vioscreen_sfa200 |
0.368438344 |
| vioscreen_sfa220 |
0.5778903910000001 |
| vioscreen_sfa40 |
0.5038630239999999 |
| vioscreen_sfa60 |
0.324054791 |
| vioscreen_sfa80 |
0.284082178 |
| vioscreen_sfatot |
24.54689908 |
| vioscreen_sodium |
3194.941096 |
| vioscreen_sorbitol |
0.178630129 |
| vioscreen_srvid |
18730 |
| vioscreen_starch |
60.02693707 |
| vioscreen_started |
5/20/15 |
| vioscreen_subject_id |
Not provided |
| vioscreen_sucpoly |
0 |
| vioscreen_sucrlose |
0 |
| vioscreen_sucrose |
35.91876873 |
| vioscreen_sweet_servings |
0.43836 |
| vioscreen_tagatose |
1.383835717 |
| vioscreen_tfa161t |
0.041863013 |
| vioscreen_tfa181t |
1.3491505240000001 |
| vioscreen_tfa182t |
0.34723285 |
| vioscreen_tgrain |
3.389424698 |
| vioscreen_thiamin |
1.105232803 |
| vioscreen_threonin |
2.367370104 |
| vioscreen_time |
28 |
| vioscreen_totaltfa |
1.78876719 |
| vioscreen_totcla |
0.10432878300000001 |
| vioscreen_totfolat |
302.80310360000004 |
| vioscreen_totsugar |
96.59439212 |
| vioscreen_tryptoph |
0.712794557 |
| vioscreen_tyrosine |
2.168492983 |
| vioscreen_user_id |
18730 |
| vioscreen_v_drkgr |
0.49389042299999997 |
| vioscreen_v_orange |
0.44619174100000003 |
| vioscreen_v_other |
0.929260254 |
| vioscreen_v_potato |
0.231808221 |
| vioscreen_v_starcy |
0.092602738 |
| vioscreen_v_tomato |
0.32950686100000004 |
| vioscreen_v_total |
2.523506394 |
| vioscreen_valine |
3.1084930839999996 |
| vioscreen_veg5_day |
3.9 |
| vioscreen_vegetable_servings |
2 |
| vioscreen_vegsumm |
5 |
| vioscreen_visit |
1 |
| vioscreen_vita_iu |
16748.70685 |
| vioscreen_vita_rae |
1057.6709759999999 |
| vioscreen_vita_re |
1851.07089 |
| vioscreen_vitb12 |
2.991808246 |
| vioscreen_vitb6 |
1.538081924 |
| vioscreen_vitc |
66.34911173 |
| vioscreen_vitd |
6.658739565 |
| vioscreen_vitd2 |
0.364547939 |
| vioscreen_vitd3 |
6.294218884 |
| vioscreen_vitd_iu |
266.34958259999996 |
| vioscreen_vite_iu |
21.29312393 |
| vioscreen_vitk |
244.25515840000003 |
| vioscreen_water |
1408.893408 |
| vioscreen_weight |
Not provided |
| vioscreen_wgrain |
1.20926012 |
| vioscreen_whole_grain_servings |
0.75384 |
| vioscreen_xylitol |
0.016301373 |
| vioscreen_zinc |
8.178027344 |
| vitamin_b_supplement_frequency |
Rarely (a few times/month) |
| vitamin_d_supplement_frequency |
Regularly (3-5 times/week) |
| vivid_dreams |
Not provided |
| weight kg |
63 |
| weight_change |
Remained stable |
| weight_units |
kilograms |
| whole_eggs |
Occasionally (1-2 times/week) |
| whole_grain_frequency |
Rarely (less than once/week) |