home > biosample > SAMEA3697728
identifier SAMEA3697728
type biosample
sameAs
sra-sample  ERS1004877
organism uncultured soil microorganism
attributes
ENA first public  2016-02-06
ENA last update  2016-10-21
ENA-CHECKLIST  ERC000011
External Id  SAMEA3697728
INSDC center alias  HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.
INSDC center name  HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.
INSDC first public  2016-02-06T17:05:42Z
INSDC last update  2016-10-21T09:49:08Z
INSDC status  public
Submitter Id  147
amount or size of sample collected  15
base saturation  11.41
carbon/nitrogen  15.76
cation exchange capacity  68.9
collected by  Zhiqin Pei and Christina Weissbecker
collection date  2011-10
composite design/sieving (if any)  one forest plot had the size 25.8 m x 25.8 m with 400 tree individuals planted in 1.29 m distance, at each forest plot four tree individuals of each tree species were randomly selected for sampling, at each sampling tree four soil cores were retrieved at 20-30 cm distance in each direction, all four cores form one composite sample for each sampling tree
depth  0.1
diversity level  2
dna extraction kit  rewetting of 1 g soil with 5 ml clean water five min prior to extraction,RNA Power Soil Total RNA Isolation kit followed by RNA Power Soil DNA Elution Accessory kit (Mobio)
environment (biome)  forest
environment (feature)  subtropical experimental forest
environment (material)  soil
environmental package  soil
experimental factor  diversity gradient
geographic location (country and/or sea)  China
geographic location (elevation)  190.24
geographic location (latitude)  29.12302041
geographic location (longitude)  117.9092154
geographic location (region and locality)  Jiangxi Province, Xingangshan village
history/previous land use  Cunninghamia lanceolata plantation
investigation type  mimarks-survey
iron exchange capacity  0
mycorrhiza type sampling tree  EcM
note  soil
ph_h2o  4.52
plot id  P26
sample collection device or method  metal soil corer of 6 cm diameter and 10 cm height
sample material processing  removal of roots and stones,sieving 2 mm mesh, homogenization of 4 soil cores collected around one sampling tree, snap-freezing of about 15g soil in liquid nitrogen, transport on dry ice and storage at -80�C, freeze-drying before transport and relocation to -80�C upon arrival four days later
sample name  147
sample weight for DNA extraction  1
sampling tree  Quercus_serrata
slope  26.18
soil taxonomic/fao classification  Cambisol
storage conditions (fresh/frozen/other)  freeze-dried for transportation and long-term storage at -80�C
total organic carbon  1.86
url  http://www.bef-china.de
water content  27.21
properties 
{...}
dbXrefs
bioproject  PRJEB12020
sra-run  ERR1188137ERR1193339
sra-submission  ERA542517ERA546370
sra-study  ERP013453
sra-sample  ERS1004877
sra-experiment  ERX1261626ERX1266723
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-02-07T11:06:14Z
dateModified 2021-08-21T09:17:07Z
datePublished 2016-02-06T00:00:00Z