home > biosample > SAMEA4076405
identifier SAMEA4076405
type biosample
sameAs
sra-sample　 ERS1247515
organism bird metagenome
attributes
ENA first public　 2016-07-13
ENA last update　 2016-07-13
ENA-CHECKLIST　 ERC000011
External Id　 SAMEA4076405
INSDC center alias　 UCSDMI
INSDC center name　 University of California San Diego Microbiome Initiative
INSDC first public　 2016-07-13T17:01:27Z
INSDC last update　 2016-07-13T01:15:08Z
INSDC status　 public
Submitter Id　 qiita_sid_1632:1632.E4D08.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
altitude　 0
anonymized name　 E4D08
arcsine_fledge_success_brood　 Missing: Not collected
arcsine_fledge_success_clutch　 Missing: Not collected
arcsine_hatching_success　 0.785398163
area　 Granada
assigned_from_geo　 true
backup　 true
bird_family　 Turdidae
bird_order　 Passeriformes
broken_eggs　 0
brood_size　 3
clutch_size　 3
code_id_statistica　 390
coll_date_juliane_days　 Missing: Not collected
collection date　 4/19/07 0:00
collection_timestamp　 4/19/07
common name　 organismal metagenome
country　 GAZ:Spain
country_nation　 Spain
country_region　 Hoya de Guadix
culturing_date　 5/25/07
depth　 0
dna_extracted　 true
elevation　 701
empo_0　 EMP sample
empo_1　 Host-associated
empo_2　 Animal
empo_3　 Animal surface
enterobacteriaceae_density　 57221.96158
enterococcus_density　 0
env biome　 mediterranean shrubland biome
env feature　 nest of bird
env matter　 egg
env package　 host-associated
eppendorf_name　 D 44.1
estefania_plates　 4D08
extracted DNA avail now　 true
feathers　 false
fledge_success_brood　 Missing: Not collected
fledge_success_clutch　 Missing: Not collected
fledging_date　 Missing: Not collected
geo loc name　 Spain:Hoya de Guadix
hatching_date　 4/30/07
hatching_success　 0.5
hatching_synchrony　 asyn
host common name　 Blackbird
host scientific name　 Passeriformes
host subject id　 Mirlo.D44.1
host taxid　 9187
latitude　 37.17907778
lay_date_juliane_days　 Missing: Not provided
laying_date　 Missing: Not provided
log_enterobacteriaceae_density　 4.757570331
log_enterococcus_density　 0
log_mesophiles_density　 7.277435999
log_rel_growth_enterobact　 Missing: Not provided
log_rel_growth_enterococcus　 Missing: Not provided
log_rel_growth_mesophiles　 Missing: Not provided
log_rel_growth_staphylococcus　 Missing: Not provided
log_staphylococcus_density　 0.473219901
longitude　 -3.611505556
mesophiles_density　 18942442.45
nest_type　 open
number_fledging　 Missing: Not provided
number_sampled_eggs　 3
observer　 Juandiego
physical_specimen_location　 CCME
physical_specimen_remaining　 true
plants　 true
platero_plates　 P4B05
public　 true
required_sample_info_status　 completed
sample name　 qiita_sid_1632:1632.E4D08.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type　 bird egg shell
sample_nest　 Mirlo.D44.1
sample_progress　 sequenced (16S)
sampling time　 1
sampling_code_id　 409
species name　 Turdus merula
staphylococcus_density　 1.973171089
storing_days　 Missing: Not provided
unhatched_eggs　 3
year　 2007
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB14786
sra-run　 ERR1530079
sra-submission　 ERA674159
sra-study　 ERP016455
sra-sample　 ERS1247515
sra-experiment　 ERX1600971
distribution JSONJSON-LD
Download
biosample_set.xml.gz　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-07-14T12:08:08Z
dateModified 2021-08-21T12:49:59Z
datePublished 2016-07-13T00:00:00Z