home > biosample > SAMEA4076530
identifier SAMEA4076530
type biosample
sameAs
sra-sample　 ERS1247640
organism bird metagenome
attributes
ENA first public　 2016-07-13
ENA last update　 2016-07-13
ENA-CHECKLIST　 ERC000011
External Id　 SAMEA4076530
INSDC center alias　 UCSDMI
INSDC center name　 University of California San Diego Microbiome Initiative
INSDC first public　 2016-07-13T17:01:27Z
INSDC last update　 2016-07-13T01:15:12Z
INSDC status　 public
Submitter Id　 qiita_sid_1632:1632.E5F02.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned　 No
altitude　 0
anonymized name　 E5F02
arcsine_fledge_success_brood　 Missing: Not collected
arcsine_fledge_success_clutch　 Missing: Not collected
arcsine_hatching_success　 Missing: Not collected
area　 Cortijo Perro
assigned_from_geo　 true
backup　 true
bird_family　 Columbiadae
bird_order　 Columbiformes
broken_eggs　 Missing: Not collected
brood_size　 Missing: Not collected
clutch_size　 2
code_id_statistica　 438
coll_date_juliane_days　 144
collection date　 5/25/07 0:00
collection_timestamp　 5/25/07
comments_in_spanish　 Abandonados
common name　 organismal metagenome
country　 GAZ:Spain
country_nation　 Spain
country_region　 Hoya de Guadix
culturing_date　 5/29/07
depth　 0
dna_extracted　 true
elevation　 1160
empo_0　 EMP sample
empo_1　 Host-associated
empo_2　 Animal
empo_3　 Animal surface
enterobacteriaceae_density　 1.000692353
enterococcus_density　 0
env biome　 mediterranean shrubland biome
env feature　 nest of bird
env matter　 egg
env package　 host-associated
eppendorf_name　 PAL VER 2.1
estefania_plates　 5F02
extracted DNA avail now　 true
feathers　 false
fledge_success_brood　 Missing: Not collected
fledge_success_clutch　 Missing: Not collected
fledging_date　 Missing: Not collected
geo loc name　 Spain:Hoya de Guadix
hatching_date　 Missing: Not collected
hatching_success　 Missing: Not collected
hatching_synchrony　 asyn
host common name　 Rock pigeon
host scientific name　 Columbiformes
host subject id　 Palomabravia.PalBer2.1
host taxid　 8932
latitude　 37.32654722
lay_date_juliane_days　 Missing: Not provided
laying_date　 Missing: Not provided
log_enterobacteriaceae_density　 0.301180312
log_enterococcus_density　 0
log_mesophiles_density　 1.639780179
log_rel_growth_enterobact　 Missing: Not provided
log_rel_growth_enterococcus　 Missing: Not provided
log_rel_growth_mesophiles　 Missing: Not provided
log_rel_growth_staphylococcus　 Missing: Not provided
log_staphylococcus_density　 0
longitude　 -3.059219444
mesophiles_density　 42.62949424
nest_type　 hole
number_fledging　 Missing: Not provided
number_sampled_eggs　 2
observer　 Juanma
physical_specimen_location　 CCME
physical_specimen_remaining　 true
plants　 false
platero_plates　 P4F09
predated　 egg phase
public　 true
required_sample_info_status　 completed
sample name　 qiita_sid_1632:1632.E5F02.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type　 bird egg shell
sample_nest　 Palomabravia.PalBer2.1
sample_progress　 sequenced (16S)
sampling time　 1
sampling_code_id　 476
species name　 Columba livia
staphylococcus_density　 0
storing_days　 4
unhatched_eggs　 Missing: Not provided
year　 2007
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB14786
sra-run　 ERR1530204
sra-submission　 ERA674159
sra-study　 ERP016455
sra-sample　 ERS1247640
sra-experiment　 ERX1601096
distribution JSONJSON-LD
Download
biosample_set.xml.gz　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-07-14T12:08:25Z
dateModified 2021-08-21T12:50:13Z
datePublished 2016-07-13T00:00:00Z